Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc05g040040.1.1 | Tomato | cytosol | 95.39 | 95.39 |
| PGSC0003DMT400015675 | Potato | cytosol | 75.66 | 70.12 |
| KRH14138 | Soybean | nucleus | 63.82 | 62.99 |
| KRH73996 | Soybean | cytosol | 62.5 | 61.69 |
| VIT_12s0057g00720.t01 | Wine grape | cytosol | 63.16 | 56.47 |
| CDY19964 | Canola | cytosol | 51.32 | 51.32 |
| CDX86323 | Canola | cytosol | 51.32 | 50.98 |
| Bra036183.1-P | Field mustard | cytosol | 50.66 | 50.66 |
| CDY00072 | Canola | cytosol | 50.66 | 50.66 |
| CDY54510 | Canola | cytosol | 50.66 | 50.33 |
| Bra020714.1-P | Field mustard | cytosol | 51.32 | 50.0 |
| CDY48737 | Canola | cytosol | 51.32 | 50.0 |
| Bra037508.1-P | Field mustard | cytosol | 51.32 | 49.68 |
| AT5G48170.1 | Thale cress | cytosol | 51.32 | 49.68 |
| CDY05699 | Canola | cytosol | 50.66 | 49.36 |
| Zm00001d028159_P001 | Maize | cytosol | 46.71 | 39.89 |
| Zm00001d048185_P001 | Maize | cytosol | 46.71 | 39.44 |
| Os03t0196500-00 | Rice | cytosol | 46.05 | 39.33 |
| TraesCS4D01G263600.1 | Wheat | cytosol | 46.05 | 38.67 |
| TraesCS4B01G263400.1 | Wheat | cytosol | 45.39 | 37.91 |
| HORVU4Hr1G071100.2 | Barley | cytosol, mitochondrion | 46.05 | 37.63 |
| TraesCS4A01G042900.1 | Wheat | cytosol | 45.39 | 37.3 |
| OQU93068 | Sorghum | cytosol | 46.05 | 34.83 |
| PGSC0003DMT400008560 | Potato | nucleus | 28.29 | 20.77 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400048479 | EnsemblPlantsGene:PGSC0003DMG400018830 | EntrezGene:107059712 | Gene3D:1.20.1280.50 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:IPR001810 | PANTHER:PTHR12874 | PANTHER:PTHR12874:SF10 |
| PFAM:PF12937 | PGSC:PGSC0003DMG400018830 | RefSeq:XP_015161987.1 | SEG:seg | SUPFAM:SSF81383 | UniParc:UPI000294A826 |
| UniProt:M1BMH6 | MapMan:11.6.2.3 | MapMan:19.2.2.8.1.4.1 | : | : | : |
Description
F-box protein SNE [Source:PGSC_GENE;Acc:PGSC0003DMG400018830]
Coordinates
chr5:+:34035767..34036225
Molecular Weight (calculated)
17091.0 Da
IEP (calculated)
7.735
GRAVY (calculated)
0.243
Length
152 amino acids
Sequence
(BLAST)
(BLAST)
001: MVQLENGTNF FINDNVDVLI VILQRLDGGS LGVAACVCKL WCSITRNDSL WEHLCFRHVS PPPEGVRTVV LALGGYRRLY MVCIKPVLDR LRKWKKGTGF
101: DESEVMKRVW MQHEVELSLS LFCVDYYERV FLSGGGGAAA SSLMFLCNAV NV
101: DESEVMKRVW MQHEVELSLS LFCVDYYERV FLSGGGGAAA SSLMFLCNAV NV
001: MSSEKRVGMV EKSNNKRQRV NQVPVFSIND HHDVLVEILR RLDGSSLCSA ACVCRLWSAV ARNDSIWEEL CFRQVSPRPS LSLRSVVSAL GGYRCLYFLC
101: IRPVLARLPK LLWTRDQLQL SLSLYCVHYY ERLYVGAWLG DAPPSSLIFL RKPVNVV
101: IRPVLARLPK LLWTRDQLQL SLSLYCVHYY ERLYVGAWLG DAPPSSLIFL RKPVNVV
Arabidopsis Description
SNESNE [Source:UniProtKB/TrEMBL;Acc:A0A178UIU3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.