Factsheet for Bra020714.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
golgi 2
cytosol 2
nucleus 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	plastid
EpiLoc:	golgi
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003735.1-P
Bra008231.1-P
Bra012213.1-P
Bra012214.1-P
Bra012216.1-P
Bra014159.1-P
Bra015801.1-P
Bra018756.1-P
Bra018757.1-P
Bra025795.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G48170.1	Bra012213.1-P	AT1G20140.1	15161962
AT5G48170.1	Bra012214.1-P	AT1G20140.1	15161962
AT5G48170.1	Bra012216.1-P	AT1G20140.1	15161962
AT5G48170.1	Bra025795.1-P	AT1G20140.1	15161962
AT5G48170.1	Bra003735.1-P	AT1G75950.1	15161962
AT5G48170.1	Bra008231.1-P	AT1G75950.1	15161962
AT5G48170.1	Bra015801.1-P	AT1G75950.1	15161962
AT5G48170.1	Bra012213.1-P	AT2G25700.1	15161962
AT5G48170.1	Bra012214.1-P	AT2G25700.1	15161962
AT5G48170.1	Bra012216.1-P	AT2G25700.1	15161962
AT5G48170.1	Bra025795.1-P	AT2G25700.1	15161962
AT5G48170.1	Bra014159.1-P	AT3G60010.1	15161962
AT5G48170.1	Bra018756.1-P	AT3G60010.1	15161962
AT5G48170.1	Bra018757.1-P	AT3G60010.1	15161962

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY48737	Canola	cytosol	99.36	99.36
CDY05699	Canola	cytosol	98.72	98.72
AT5G48170.1	Thale cress	cytosol	94.23	93.63
Bra036183.1-P	Field mustard	cytosol	89.74	92.11
Bra037508.1-P	Field mustard	cytosol	88.46	87.9
KRH14138	Soybean	nucleus	53.85	54.55
KRH73996	Soybean	cytosol	51.92	52.6
VIT_12s0057g00720.t01	Wine grape	cytosol	56.41	51.76
PGSC0003DMT400048479	Potato	cytosol	50.0	51.32
Solyc05g040040.1.1	Tomato	cytosol	50.0	51.32
PGSC0003DMT400015675	Potato	cytosol	50.64	48.17
Solyc07g047680.1.1	Tomato	cytosol	51.28	47.9
Zm00001d048185_P001	Maize	cytosol	48.72	42.22
Zm00001d028159_P001	Maize	cytosol	48.08	42.13
Os03t0196500-00	Rice	cytosol	47.44	41.57
HORVU4Hr1G071100.2	Barley	cytosol, mitochondrion	49.36	41.4
TraesCS4D01G263600.1	Wheat	cytosol	47.44	40.88
TraesCS4B01G263400.1	Wheat	cytosol	47.44	40.66
TraesCS4A01G042900.1	Wheat	cytosol	48.08	40.54
OQU93068	Sorghum	cytosol	46.79	36.32
Bra013776.1-P	Field mustard	nucleus	23.08	24.66

Protein Annotations

EnsemblPlants:Bra020714.1	EnsemblPlants:Bra020714.1-P	EnsemblPlantsGene:Bra020714	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR12874	PANTHER:PTHR12874:SF10
PFAM:PF12937	SMART:SM00256	SUPFAM:SSF81383	UniParc:UPI000254614F	UniProt:M4DW20	MapMan:11.6.2.3
MapMan:19.2.2.8.1.4.1	:	:	:	:	:

Description

AT5G48170 (E=2e-084) SLY2 | SLY2 (SLEEPY2)

Coordinates

chrA02:-:23570585..23571055

Molecular Weight (calculated)

17895.0 Da

IEP (calculated)

9.566

GRAVY (calculated)

0.067

Length

156 amino acids

Sequence
(BLAST)

001: MSEKRIGMVE KSNNKRQRVN LVPTFSINDH HDVLVEILRR LDGPSLCSAA CVCRLWSAVA RNDSIWEELC FRQVSPRPSL SLRSVVSALG GYRCLYFLCI
101: RPVLARLPKI IWSRDQLQLS LSLYCVHYYE RLYVGAWLGD APPSSLMFLR KPVNVV

Best Arabidopsis Sequence Match ( AT5G48170.1 )
(BLAST)

001: MSSEKRVGMV EKSNNKRQRV NQVPVFSIND HHDVLVEILR RLDGSSLCSA ACVCRLWSAV ARNDSIWEEL CFRQVSPRPS LSLRSVVSAL GGYRCLYFLC
101: IRPVLARLPK LLWTRDQLQL SLSLYCVHYY ERLYVGAWLG DAPPSSLIFL RKPVNVV

Arabidopsis Description

SNESNE [Source:UniProtKB/TrEMBL;Acc:A0A178UIU3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.