Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d048185_P001 | Maize | cytosol | 84.83 | 83.89 |
| Os03t0196500-00 | Rice | cytosol | 73.03 | 73.03 |
| TraesCS4B01G263400.1 | Wheat | cytosol | 71.91 | 70.33 |
| TraesCS4D01G263600.1 | Wheat | cytosol | 71.35 | 70.17 |
| TraesCS4A01G042900.1 | Wheat | cytosol | 71.91 | 69.19 |
| OQU93068 | Sorghum | cytosol | 78.09 | 69.15 |
| HORVU4Hr1G071100.2 | Barley | cytosol, mitochondrion | 67.42 | 64.52 |
| CDX86323 | Canola | cytosol | 42.7 | 49.67 |
| CDY54510 | Canola | cytosol | 42.7 | 49.67 |
| Bra037508.1-P | Field mustard | cytosol | 43.26 | 49.04 |
| CDY19964 | Canola | cytosol | 41.57 | 48.68 |
| Bra020714.1-P | Field mustard | cytosol | 42.13 | 48.08 |
| Bra036183.1-P | Field mustard | cytosol | 41.01 | 48.03 |
| AT5G48170.1 | Thale cress | cytosol | 42.13 | 47.77 |
| CDY48737 | Canola | cytosol | 41.57 | 47.44 |
| CDY05699 | Canola | cytosol | 41.57 | 47.44 |
| KRH73996 | Soybean | cytosol | 41.01 | 47.4 |
| KRH14138 | Soybean | nucleus | 41.01 | 47.4 |
| CDY00072 | Canola | cytosol | 40.45 | 47.37 |
| PGSC0003DMT400048479 | Potato | cytosol | 39.89 | 46.71 |
| Solyc05g040040.1.1 | Tomato | cytosol | 39.89 | 46.71 |
| VIT_12s0057g00720.t01 | Wine grape | cytosol | 43.82 | 45.88 |
| PGSC0003DMT400015675 | Potato | cytosol | 42.13 | 45.73 |
| Solyc07g047680.1.1 | Tomato | cytosol | 42.13 | 44.91 |
| Zm00001d016973_P001 | Maize | nucleus | 25.28 | 19.07 |
| Zm00001d050903_P001 | Maize | cytosol | 26.97 | 12.57 |
Protein Annotations
| EnsemblPlants:Zm00001d028159_P001 | EnsemblPlants:Zm00001d028159_T001 | EnsemblPlantsGene:Zm00001d028159 | Gene3D:1.20.1280.50 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:IPR001810 | PANTHER:PTHR12874 | PANTHER:PTHR12874:SF10 |
| PFAM:PF12937 | ProteinID:ONL94847.1 | SEG:seg | SUPFAM:SSF81383 | UniParc:UPI00022155EE | UniProt:A0A1D6JSF6 |
| MapMan:11.6.2.3 | MapMan:19.2.2.8.1.4.1 | : | : | : | : |
Description
F-box protein GID2
Coordinates
chr1:+:24572142..24572678
Molecular Weight (calculated)
18209.9 Da
IEP (calculated)
8.379
GRAVY (calculated)
0.144
Length
178 amino acids
Sequence
(BLAST)
(BLAST)
001: MGGAGEVTEL ELRIQLPDGG GGGGYNINDN ADILAEILAR LDGRSLAAAA CVCRLWAAVA RRDAVWEALC LRHVGPAPPA AAAGPATRAV VAALGGYRRL
101: YRLCLGPALD RLAQAQAQAA RAHHLSLSLS LSLFSIDCYE RLGGGGGAAG PSAGAGARGR QQQQPSSLLF LCKPVDVS
101: YRLCLGPALD RLAQAQAQAA RAHHLSLSLS LSLFSIDCYE RLGGGGGAAG PSAGAGARGR QQQQPSSLLF LCKPVDVS
001: MSSEKRVGMV EKSNNKRQRV NQVPVFSIND HHDVLVEILR RLDGSSLCSA ACVCRLWSAV ARNDSIWEEL CFRQVSPRPS LSLRSVVSAL GGYRCLYFLC
101: IRPVLARLPK LLWTRDQLQL SLSLYCVHYY ERLYVGAWLG DAPPSSLIFL RKPVNVV
101: IRPVLARLPK LLWTRDQLQL SLSLYCVHYY ERLYVGAWLG DAPPSSLIFL RKPVNVV
Arabidopsis Description
SNESNE [Source:UniProtKB/TrEMBL;Acc:A0A178UIU3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.