Factsheet for VIT_12s0057g00720.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
nucleus 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_18s0001g14860.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G48170.1	VIT_18s0001g14860.t01	AT5G42190.1	15161962

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH14138	Soybean	nucleus	62.35	68.83
KRH73996	Soybean	cytosol	61.76	68.18
PGSC0003DMT400048479	Potato	cytosol	56.47	63.16
Solyc05g040040.1.1	Tomato	cytosol	55.29	61.84
PGSC0003DMT400015675	Potato	cytosol	58.82	60.98
Solyc07g047680.1.1	Tomato	cytosol	58.24	59.28
Bra020714.1-P	Field mustard	cytosol	51.76	56.41
CDY05699	Canola	cytosol	51.76	56.41
AT5G48170.1	Thale cress	cytosol	51.76	56.05
CDY48737	Canola	cytosol	51.18	55.77
CDX86323	Canola	cytosol	50.0	55.56
CDY54510	Canola	cytosol	48.82	54.25
Bra037508.1-P	Field mustard	cytosol	50.0	54.14
CDY19964	Canola	cytosol	48.24	53.95
CDY00072	Canola	cytosol	47.65	53.29
Bra036183.1-P	Field mustard	cytosol	47.65	53.29
Os03t0196500-00	Rice	cytosol	46.47	44.38
TraesCS4B01G263400.1	Wheat	cytosol	47.06	43.96
Zm00001d048185_P001	Maize	cytosol	46.47	43.89
Zm00001d028159_P001	Maize	cytosol	45.88	43.82
TraesCS4D01G263600.1	Wheat	cytosol	46.47	43.65
TraesCS4A01G042900.1	Wheat	cytosol	47.06	43.24
HORVU4Hr1G071100.2	Barley	cytosol, mitochondrion	47.06	43.01
OQU93068	Sorghum	cytosol	47.06	39.8
VIT_07s0129g01000.t01	Wine grape	cytosol	29.41	27.17
VIT_18s0001g09700.t01	Wine grape	nucleus	28.82	26.63

Protein Annotations

Gene3D:1.20.1280.50	EntrezGene:100245985	wikigene:100245985	MapMan:11.6.2.3	MapMan:19.2.2.8.1.4.1	UniProt:A5B021
EMBL:AM441972	ProteinID:CAN67350	ProteinID:CAN67350.1	ProteinID:CCB51725	ProteinID:CCB51725.1	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	EMBL:FN595759	GO:GO:0000151	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0019538	GO:GO:0043161	InterPro:IPR001810	EntrezGene:LOC100245985	wikigene:LOC100245985
PFAM:PF12937	PANTHER:PTHR12874	PANTHER:PTHR12874:SF10	SMART:SM00256	SUPFAM:SSF81383	UniParc:UPI000151FD93
ArrayExpress:VIT_12s0057g00720	EnsemblPlantsGene:VIT_12s0057g00720	EnsemblPlants:VIT_12s0057g00720.t01	unigene:Vvi.16022	RefSeq:XP_002269904	RefSeq:XP_002269904.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr12:-:9343016..9343803

Molecular Weight (calculated)

19122.6 Da

IEP (calculated)

9.887

GRAVY (calculated)

-0.110

Length

170 amino acids

Sequence
(BLAST)

001: MVQLLCRSKF QRGMGHGEKE KKPRFFINDN TDILMEILKR LDGRSLGVAA CVCRLWRSVT WNDSLWEHLC FRHVSPPPPG VRPVVVALGG YRRLYMMCLR
101: PVLSRLGQMK RGLGGSGGGG DSDLVGRVWT RDSVQLSLSL FCVDYYERLD GRLGDASTSS LMFLCKPVNV

Best Arabidopsis Sequence Match ( AT5G48170.1 )
(BLAST)

001: MSSEKRVGMV EKSNNKRQRV NQVPVFSIND HHDVLVEILR RLDGSSLCSA ACVCRLWSAV ARNDSIWEEL CFRQVSPRPS LSLRSVVSAL GGYRCLYFLC
101: IRPVLARLPK LLWTRDQLQL SLSLYCVHYY ERLYVGAWLG DAPPSSLIFL RKPVNVV

Arabidopsis Description

SNESNE [Source:UniProtKB/TrEMBL;Acc:A0A178UIU3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.