Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH14138 | Soybean | nucleus | 95.45 | 95.45 |
| PGSC0003DMT400048479 | Potato | cytosol | 61.69 | 62.5 |
| VIT_12s0057g00720.t01 | Wine grape | cytosol | 68.18 | 61.76 |
| Solyc05g040040.1.1 | Tomato | cytosol | 60.39 | 61.18 |
| PGSC0003DMT400015675 | Potato | cytosol | 60.39 | 56.71 |
| Solyc07g047680.1.1 | Tomato | cytosol | 61.04 | 56.29 |
| CDX86323 | Canola | cytosol | 52.6 | 52.94 |
| CDY54510 | Canola | cytosol | 52.6 | 52.94 |
| Bra020714.1-P | Field mustard | cytosol | 52.6 | 51.92 |
| CDY05699 | Canola | cytosol | 52.6 | 51.92 |
| Bra037508.1-P | Field mustard | cytosol | 52.6 | 51.59 |
| CDY19964 | Canola | cytosol | 50.65 | 51.32 |
| CDY48737 | Canola | cytosol | 51.95 | 51.28 |
| AT5G48170.1 | Thale cress | cytosol | 51.95 | 50.96 |
| CDY00072 | Canola | cytosol | 50.0 | 50.66 |
| Bra036183.1-P | Field mustard | cytosol | 50.0 | 50.66 |
| Zm00001d028159_P001 | Maize | cytosol | 47.4 | 41.01 |
| Os03t0196500-00 | Rice | cytosol | 47.4 | 41.01 |
| TraesCS4B01G263400.1 | Wheat | cytosol | 48.05 | 40.66 |
| Zm00001d048185_P001 | Maize | cytosol | 47.4 | 40.56 |
| TraesCS4D01G263600.1 | Wheat | cytosol | 47.4 | 40.33 |
| HORVU4Hr1G071100.2 | Barley | cytosol, mitochondrion | 47.4 | 39.25 |
| TraesCS4A01G042900.1 | Wheat | cytosol | 46.75 | 38.92 |
| OQU93068 | Sorghum | cytosol | 47.4 | 36.32 |
| KRH15421 | Soybean | cytosol | 22.08 | 23.61 |
| KRH05620 | Soybean | cytosol | 24.03 | 21.26 |
| KRH52046 | Soybean | cytosol | 22.73 | 20.11 |
| KRH61359 | Soybean | cytosol | 22.08 | 18.58 |
Protein Annotations
| Gene3D:1.20.1280.50 | EntrezGene:100791579 | MapMan:11.6.2.3 | MapMan:19.2.2.8.1.4.1 | EMBL:ACUP02001293 | InterPro:F-box-like_dom_sf |
| InterPro:F-box_dom | EnsemblPlantsGene:GLYMA_02G304900 | GO:GO:0000151 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 |
| GO:GO:0009987 | GO:GO:0019538 | GO:GO:0043161 | UniProt:I1JJP5 | InterPro:IPR001810 | EnsemblPlants:KRH73996 |
| ProteinID:KRH73996 | ProteinID:KRH73996.1 | PFAM:PF12937 | PANTHER:PTHR12874 | PANTHER:PTHR12874:SF10 | SMART:SM00256 |
| SUPFAM:SSF81383 | UniParc:UPI0002337679 | SEG:seg | : | : | : |
Description
hypothetical protein
Coordinates
chr2:+:47990282..47991740
Molecular Weight (calculated)
17518.3 Da
IEP (calculated)
8.923
GRAVY (calculated)
-0.098
Length
154 amino acids
Sequence
(BLAST)
(BLAST)
001: MVQQQQHRVE QEKRPRFFIN DNIDILREIL KRLDGPSLGV AACVCRLWCS LTSNDDSLWE HLCFRHVSSP PPASVKAVVV ALGGYKRLYM VCVRPVLSRL
101: GDSERVRKRV WTRHEVQLSL SLFCIDSYER LGSGRIPSDA SASSLMFLCN SVNV
101: GDSERVRKRV WTRHEVQLSL SLFCIDSYER LGSGRIPSDA SASSLMFLCN SVNV
001: MSSEKRVGMV EKSNNKRQRV NQVPVFSIND HHDVLVEILR RLDGSSLCSA ACVCRLWSAV ARNDSIWEEL CFRQVSPRPS LSLRSVVSAL GGYRCLYFLC
101: IRPVLARLPK LLWTRDQLQL SLSLYCVHYY ERLYVGAWLG DAPPSSLIFL RKPVNVV
101: IRPVLARLPK LLWTRDQLQL SLSLYCVHYY ERLYVGAWLG DAPPSSLIFL RKPVNVV
Arabidopsis Description
SNESNE [Source:UniProtKB/TrEMBL;Acc:A0A178UIU3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.