Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra020714.1-P | Field mustard | cytosol | 99.36 | 99.36 |
| CDY05699 | Canola | cytosol | 98.08 | 98.08 |
| AT5G48170.1 | Thale cress | cytosol | 93.59 | 92.99 |
| CDY19964 | Canola | cytosol | 90.38 | 92.76 |
| CDY00072 | Canola | cytosol | 89.74 | 92.11 |
| CDY54510 | Canola | cytosol | 87.82 | 89.54 |
| CDX86323 | Canola | cytosol | 87.18 | 88.89 |
| KRH14138 | Soybean | nucleus | 53.21 | 53.9 |
| KRH73996 | Soybean | cytosol | 51.28 | 51.95 |
| Solyc05g040040.1.1 | Tomato | cytosol | 50.0 | 51.32 |
| PGSC0003DMT400048479 | Potato | cytosol | 50.0 | 51.32 |
| VIT_12s0057g00720.t01 | Wine grape | cytosol | 55.77 | 51.18 |
| PGSC0003DMT400015675 | Potato | cytosol | 50.64 | 48.17 |
| Solyc07g047680.1.1 | Tomato | cytosol | 51.28 | 47.9 |
| Zm00001d048185_P001 | Maize | cytosol | 48.08 | 41.67 |
| Zm00001d028159_P001 | Maize | cytosol | 47.44 | 41.57 |
| Os03t0196500-00 | Rice | cytosol | 46.79 | 41.01 |
| HORVU4Hr1G071100.2 | Barley | cytosol, mitochondrion | 48.72 | 40.86 |
| TraesCS4D01G263600.1 | Wheat | cytosol | 46.79 | 40.33 |
| TraesCS4B01G263400.1 | Wheat | cytosol | 46.79 | 40.11 |
| TraesCS4A01G042900.1 | Wheat | cytosol | 47.44 | 40.0 |
| OQU93068 | Sorghum | cytosol | 46.15 | 35.82 |
| CDY34266 | Canola | nucleus | 23.08 | 24.66 |
| CDY03475 | Canola | nucleus | 23.08 | 24.66 |
Protein Annotations
| EnsemblPlants:CDY48737 | EnsemblPlantsGene:GSBRNA2T00091631001 | Gene3D:1.20.1280.50 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:IPR001810 | PANTHER:PTHR12874 | PANTHER:PTHR12874:SF10 | PFAM:PF12937 |
| ProteinID:CDY48737 | ProteinID:CDY48737.1 | SMART:SM00256 | SUPFAM:SSF81383 | UniParc:UPI0004EDB7C8 | UniProt:A0A078IFE8 |
| MapMan:11.6.2.3 | MapMan:19.2.2.8.1.4.1 | : | : | : | : |
Description
BnaA02g29980DBnaA02g29980D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IFE8]
Coordinates
chrLK032789:-:10529..10999
Molecular Weight (calculated)
17929.0 Da
IEP (calculated)
9.566
GRAVY (calculated)
0.061
Length
156 amino acids
Sequence
(BLAST)
(BLAST)
001: MSEKRIGMVE KSNNKRQRVN LVPTFSINDH HDVLVEILRR LDGPSLCSAA CVCRLWSAVA RNDSIWEELC FRQVSPRPSL SLRSVVSALG GYRCLYFLCI
101: RPVLARLPKI IWSRDQLQLS LSLYCVHYYE RFYVGAWLGD APPSSLMFLR KPVNVV
101: RPVLARLPKI IWSRDQLQLS LSLYCVHYYE RFYVGAWLGD APPSSLMFLR KPVNVV
001: MSSEKRVGMV EKSNNKRQRV NQVPVFSIND HHDVLVEILR RLDGSSLCSA ACVCRLWSAV ARNDSIWEEL CFRQVSPRPS LSLRSVVSAL GGYRCLYFLC
101: IRPVLARLPK LLWTRDQLQL SLSLYCVHYY ERLYVGAWLG DAPPSSLIFL RKPVNVV
101: IRPVLARLPK LLWTRDQLQL SLSLYCVHYY ERLYVGAWLG DAPPSSLIFL RKPVNVV
Arabidopsis Description
SNESNE [Source:UniProtKB/TrEMBL;Acc:A0A178UIU3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.