Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra020714.1-P | Field mustard | cytosol | 98.72 | 98.72 |
| CDY48737 | Canola | cytosol | 98.08 | 98.08 |
| AT5G48170.1 | Thale cress | cytosol | 92.95 | 92.36 |
| CDY19964 | Canola | cytosol | 89.1 | 91.45 |
| CDY00072 | Canola | cytosol | 88.46 | 90.79 |
| CDY54510 | Canola | cytosol | 87.18 | 88.89 |
| CDX86323 | Canola | cytosol | 86.54 | 88.24 |
| KRH14138 | Soybean | nucleus | 53.21 | 53.9 |
| KRH73996 | Soybean | cytosol | 51.92 | 52.6 |
| VIT_12s0057g00720.t01 | Wine grape | cytosol | 56.41 | 51.76 |
| PGSC0003DMT400048479 | Potato | cytosol | 49.36 | 50.66 |
| Solyc05g040040.1.1 | Tomato | cytosol | 48.72 | 50.0 |
| PGSC0003DMT400015675 | Potato | cytosol | 50.0 | 47.56 |
| Solyc07g047680.1.1 | Tomato | cytosol | 50.64 | 47.31 |
| Zm00001d048185_P001 | Maize | cytosol | 48.08 | 41.67 |
| Zm00001d028159_P001 | Maize | cytosol | 47.44 | 41.57 |
| Os03t0196500-00 | Rice | cytosol | 46.79 | 41.01 |
| HORVU4Hr1G071100.2 | Barley | cytosol, mitochondrion | 48.72 | 40.86 |
| TraesCS4D01G263600.1 | Wheat | cytosol | 46.79 | 40.33 |
| TraesCS4B01G263400.1 | Wheat | cytosol | 46.79 | 40.11 |
| TraesCS4A01G042900.1 | Wheat | cytosol | 47.44 | 40.0 |
| OQU93068 | Sorghum | cytosol | 46.15 | 35.82 |
| CDY34266 | Canola | nucleus | 23.08 | 24.66 |
| CDY03475 | Canola | nucleus | 23.08 | 24.66 |
Protein Annotations
| EnsemblPlants:CDY05699 | EnsemblPlantsGene:GSBRNA2T00120715001 | Gene3D:1.20.1280.50 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:IPR001810 | PANTHER:PTHR12874 | PANTHER:PTHR12874:SF10 | PFAM:PF12937 |
| ProteinID:CDY05699 | ProteinID:CDY05699.1 | SUPFAM:SSF81383 | UniParc:UPI0004EB832E | MapMan:11.6.2.3 | MapMan:19.2.2.8.1.4.1 |
Description
BnaC02g38380D
Coordinates
chrLK031963:+:1035464..1035934
Molecular Weight (calculated)
17852.0 Da
IEP (calculated)
9.143
GRAVY (calculated)
0.107
Length
156 amino acids
Sequence
(BLAST)
(BLAST)
001: MSEKRIGMVE KSNNKRQRVN LVPTFPINDH HDVLVEILRR LDGPSLCSAA CVCRLWSAVA CNDSIWEELC FRQVSPRPSL SLRSVVSALG GYRCLYFLCI
101: RPVLARLPKI IWSRDQLQLS LSLYCVHYYE RLYVGAWLGD APPSSLMFLR KPVNVV
101: RPVLARLPKI IWSRDQLQLS LSLYCVHYYE RLYVGAWLGD APPSSLMFLR KPVNVV
001: MSSEKRVGMV EKSNNKRQRV NQVPVFSIND HHDVLVEILR RLDGSSLCSA ACVCRLWSAV ARNDSIWEEL CFRQVSPRPS LSLRSVVSAL GGYRCLYFLC
101: IRPVLARLPK LLWTRDQLQL SLSLYCVHYY ERLYVGAWLG DAPPSSLIFL RKPVNVV
101: IRPVLARLPK LLWTRDQLQL SLSLYCVHYY ERLYVGAWLG DAPPSSLIFL RKPVNVV
Arabidopsis Description
SNESNE [Source:UniProtKB/TrEMBL;Acc:A0A178UIU3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.