Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra018757.1-P | Field mustard | cytosol | 99.38 | 99.38 |
| CDY40611 | Canola | cytosol | 87.5 | 93.33 |
| CDY40610 | Canola | cytosol | 76.88 | 78.85 |
| CDX93698 | Canola | cytosol | 76.25 | 78.21 |
| CDX68112 | Canola | cytosol | 67.5 | 71.52 |
| CDX85931 | Canola | cytosol | 67.5 | 71.52 |
| CDY13521 | Canola | cytosol | 68.75 | 68.75 |
| CDY39073 | Canola | cytosol | 68.75 | 68.75 |
| AT3G60010.1 | Thale cress | cytosol | 65.62 | 68.18 |
| CDX77280 | Canola | cytosol | 66.88 | 67.3 |
| CDX87650 | Canola | cytosol | 66.88 | 66.46 |
| CDX73212 | Canola | cytosol | 66.88 | 66.46 |
| CDY16470 | Canola | cytosol | 65.62 | 66.04 |
| CDY44209 | Canola | cytosol | 63.12 | 62.73 |
| CDY29370 | Canola | cytosol | 61.88 | 61.49 |
| CDY69121 | Canola | cytosol | 49.38 | 60.31 |
| CDX89042 | Canola | cytosol | 59.38 | 59.75 |
| CDX80590 | Canola | cytosol | 58.12 | 57.76 |
| CDY67544 | Canola | cytosol | 55.62 | 55.28 |
| CDY03015 | Canola | cytosol | 51.88 | 54.97 |
| CDY01389 | Canola | cytosol | 55.0 | 54.66 |
| CDY63159 | Canola | cytosol | 55.0 | 54.66 |
| CDY45767 | Canola | cytosol | 50.62 | 52.6 |
| CDY14922 | Canola | cytosol | 51.88 | 49.4 |
| CDY43408 | Canola | cytosol | 46.88 | 49.34 |
| CDY68971 | Canola | cytosol | 46.25 | 48.68 |
| CDY04140 | Canola | cytosol | 48.12 | 48.43 |
| CDY17409 | Canola | cytosol | 48.12 | 48.43 |
| CDX96963 | Canola | cytosol | 51.25 | 43.39 |
Protein Annotations
| MapMan:19.2.2.8.1.1 | Gene3D:3.30.710.10 | GO:A0A078DZ33 | EnsemblPlants:CDX93699 | ProteinID:CDX93699 | ProteinID:CDX93699.1 |
| GO:GO:0006511 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0019538 |
| EnsemblPlantsGene:GSBRNA2T00156388001 | PFAM:PF01466 | PFAM:PF03931 | PIRSF:PIRSF028729 | PANTHER:PTHR11165 | PANTHER:PTHR11165:SF89 |
| InterPro:SKP1 | InterPro:SKP1-like | InterPro:SKP1-like_dim_sf | InterPro:SKP1/BTB/POZ_sf | SMART:SM00512 | SUPFAM:SSF54695 |
| SUPFAM:SSF81382 | InterPro:Skp1_comp_POZ | InterPro:Skp1_comp_dimer | UniPathway:UPA00143 | UniParc:UPI0004EDBBFD | SEG:seg |
Description
BnaA06g03490D
Coordinates
chrLK031876:-:1395378..1395860
Molecular Weight (calculated)
17739.8 Da
IEP (calculated)
4.035
GRAVY (calculated)
-0.192
Length
160 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTSRHIVLK SSDGETFEVE EAVALQSQTI AHMVEDDCID GGIPLANITG VILAKVIEYC KKHVTVVPDG DGNSSSSLEE ELKNWDAEFL SNIDQSTLFH
101: LIMAANFLNI KDLLDLTCQA VADMIKGKSP EEIRAQLNIE NDFTPEEEAQ IRAENQWAFE
101: LIMAANFLNI KDLLDLTCQA VADMIKGKSP EEIRAQLNIE NDFTPEEEAQ IRAENQWAFE
001: MAETKKMIIL KSSDGESFEI EEAVAVKSQT IKHMIEDDCA DNGIPLPNVT GAILAKVIEY CKKHVEAAAE AGGDKDFYGS AENDELKNWD SEFVKVDQPT
101: LFDLILAANY LNIGGLLDLT CKAVADQMRG KTPEQMRAHF NIKNDYTPEE EAEVRNENKW AFE
101: LFDLILAANY LNIGGLLDLT CKAVADQMRG KTPEQMRAHF NIKNDYTPEE EAEVRNENKW AFE
Arabidopsis Description
ASK4SK4 [Source:UniProtKB/TrEMBL;Acc:A0A178W187]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.