Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY33892 | Canola | cytosol | 95.56 | 94.77 |
| AT5G49610.1 | Thale cress | cytosol | 85.56 | 85.79 |
| KRH36935 | Soybean | cytosol | 66.94 | 66.94 |
| KRH11897 | Soybean | cytosol | 57.22 | 66.03 |
| PGSC0003DMT400011756 | Potato | cytosol | 65.28 | 65.28 |
| VIT_05s0077g00570.t01 | Wine grape | cytosol | 56.39 | 64.24 |
| Solyc12g099170.1.1 | Tomato | cytosol | 30.83 | 63.79 |
| GSMUA_Achr8P06320_001 | Banana | cytosol, peroxisome, plastid | 48.61 | 51.78 |
Protein Annotations
| EnsemblPlants:CDY05613 | EnsemblPlantsGene:GSBRNA2T00120577001 | Gene3D:1.20.1280.50 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:F-box-assoc_interact_dom | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:Gal_Oxase/kelch_b-propeller | InterPro:IPR001810 | PANTHER:PTHR31264 |
| PANTHER:PTHR31264:SF16 | PFAM:PF12937 | PFscan:PS50181 | ProteinID:CDY05613 | ProteinID:CDY05613.1 | SMART:SM00256 |
| SUPFAM:SSF50965 | SUPFAM:SSF81383 | TIGRFAMs:TIGR01640 | UniParc:UPI0004EDD533 | MapMan:19.2.2.8.1.4.6 | : |
Description
BnaC02g39240D
Coordinates
chrLK031963:+:175746..177001
Molecular Weight (calculated)
40921.9 Da
IEP (calculated)
8.520
GRAVY (calculated)
0.103
Length
360 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNPKGPLFP DEVILQILAR LPVKSLFRFK SVCKAWCLLP SDGYFVTLFN QVSVKEQTLV AEVSDSSTLI CVDNLRGVSE FSLEFLRDRV RIRASCNGLL
101: CCASVPEKGV YYVCNPSTRE FRMLPRSRER HVTRFYPDGE AALVGLACDV GKKGFYVVMA GYHRSFGHRP DGSFVCLVFD SESNKWRKFV SALEGCGGFT
201: HMSKNQVVFV NGKLHWLMSG LCYVLALDLE HDVWRKVSLP DEISCGGNRV YLLELDGFLS VIQLSDVWMK IWKMRDYESE VWCVVDSISL RCIKGLVPGI
301: FPICQTGEYV FLATHKQVLV YQRRSKLWKE MFSVKGSYSL PLWFSAHAFR STIVPCNYAL
101: CCASVPEKGV YYVCNPSTRE FRMLPRSRER HVTRFYPDGE AALVGLACDV GKKGFYVVMA GYHRSFGHRP DGSFVCLVFD SESNKWRKFV SALEGCGGFT
201: HMSKNQVVFV NGKLHWLMSG LCYVLALDLE HDVWRKVSLP DEISCGGNRV YLLELDGFLS VIQLSDVWMK IWKMRDYESE VWCVVDSISL RCIKGLVPGI
301: FPICQTGEYV FLATHKQVLV YQRRSKLWKE MFSVKGSYSL PLWFSAHAFR STIVPCNYAL
001: MDNQKGALFP DEVILQILAR LPVKSLFRFK SVCKSWYRLP SDKYFTSLFN QLSVKEQLLV AEVSDSSSLI CVDNLRGVSE LSLDFVRDRV RIRVSSNGLL
101: CCSSIPEKGV YYVCNPSTRE YRKLPKSRER PVTRFYPDGE ATLVGLACDL SKNKFNVVLA GYHRSFGQRP DGSFICLVFD SESNKWRKFV SVLEECSFTH
201: MSKNQVVFVN GMLHWLMSGL CYILALDVEH DVWRKISLPD EIRIGNGGGN RVYLLESDGF LSVIQLSDVW MKIWKMSEYE TETWSVVDSI SLRCIKGLVP
301: GIFPICQTGE YVFLATHKQV LVYQRRSKLW KEMFSVKGSS SLPLWFSAHA FRSTIVPCN
101: CCSSIPEKGV YYVCNPSTRE YRKLPKSRER PVTRFYPDGE ATLVGLACDL SKNKFNVVLA GYHRSFGQRP DGSFICLVFD SESNKWRKFV SVLEECSFTH
201: MSKNQVVFVN GMLHWLMSGL CYILALDVEH DVWRKISLPD EIRIGNGGGN RVYLLESDGF LSVIQLSDVW MKIWKMSEYE TETWSVVDSI SLRCIKGLVP
301: GIFPICQTGE YVFLATHKQV LVYQRRSKLW KEMFSVKGSS SLPLWFSAHA FRSTIVPCN
Arabidopsis Description
F-box protein At5g49610 [Source:UniProtKB/Swiss-Prot;Acc:Q9FGY4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.