Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, plastid, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 2
- peroxisome 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc12g099170.1.1 | Tomato | cytosol | 26.33 | 51.15 |
| VIT_05s0077g00570.t01 | Wine grape | cytosol | 47.04 | 50.32 |
| KRH36935 | Soybean | cytosol | 53.25 | 50.0 |
| PGSC0003DMT400011756 | Potato | cytosol | 52.37 | 49.17 |
| CDY33892 | Canola | cytosol | 52.37 | 48.76 |
| CDY05613 | Canola | cytosol | 51.78 | 48.61 |
| Bra020625.1-P | Field mustard | cytosol | 52.07 | 48.48 |
| KRH11897 | Soybean | cytosol | 44.67 | 48.4 |
| AT5G49610.1 | Thale cress | cytosol | 50.89 | 47.91 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr8P06320_001 | EnsemblPlants:GSMUA_Achr8T06320_001 | EnsemblPlantsGene:GSMUA_Achr8G06320_001 | Gene3D:1.20.1280.50 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:IPR001810 | PANTHER:PTHR31264 | PANTHER:PTHR31264:SF16 |
| PFAM:PF00646 | PFscan:PS50181 | SMART:SM00256 | SUPFAM:SSF81383 | UniParc:UPI0002969FD8 | UniProt:M0TN35 |
| MapMan:19.2.2.8.1.4.6 | : | : | : | : | : |
Description
Putative F-box protein At5g49610 [Source:GMGC_GENE;Acc:GSMUA_Achr8G06320_001]
Coordinates
chr8:+:4103274..4104356
Molecular Weight (calculated)
38722.1 Da
IEP (calculated)
9.397
GRAVY (calculated)
0.125
Length
338 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSSESPYGV LPTDIVTQIL ARLPVYSLFR CRSVCKLWNR LPFEKHFVDL YFRIGPKDPI LLLEFPESSA FLSVDRFRGV SAFSLGFLND KVKIRASCNG
101: LLCCSSVRNR GVYYVCNPVT REFRVLPRAR ERPLTRCQPE YEATLVGLAF DPVSWKFNVV LAGFHRFFGH RPHGEFFTHM NRCQVVFSCG LLHWLTHSCS
201: YVLAFDLKSG VWGKILLPDE VLTTRSGSRV YLLELEGSVS VVQITGVWMS IWVLRNHDTE QWTLVDRVHL RCISAFAASI FPVSQSRDVA FMATQKKILI
301: YNLKGKVWKE VYGANGTVTY PLWFSSYGFR STLFPCHL
101: LLCCSSVRNR GVYYVCNPVT REFRVLPRAR ERPLTRCQPE YEATLVGLAF DPVSWKFNVV LAGFHRFFGH RPHGEFFTHM NRCQVVFSCG LLHWLTHSCS
201: YVLAFDLKSG VWGKILLPDE VLTTRSGSRV YLLELEGSVS VVQITGVWMS IWVLRNHDTE QWTLVDRVHL RCISAFAASI FPVSQSRDVA FMATQKKILI
301: YNLKGKVWKE VYGANGTVTY PLWFSSYGFR STLFPCHL
001: MDNQKGALFP DEVILQILAR LPVKSLFRFK SVCKSWYRLP SDKYFTSLFN QLSVKEQLLV AEVSDSSSLI CVDNLRGVSE LSLDFVRDRV RIRVSSNGLL
101: CCSSIPEKGV YYVCNPSTRE YRKLPKSRER PVTRFYPDGE ATLVGLACDL SKNKFNVVLA GYHRSFGQRP DGSFICLVFD SESNKWRKFV SVLEECSFTH
201: MSKNQVVFVN GMLHWLMSGL CYILALDVEH DVWRKISLPD EIRIGNGGGN RVYLLESDGF LSVIQLSDVW MKIWKMSEYE TETWSVVDSI SLRCIKGLVP
301: GIFPICQTGE YVFLATHKQV LVYQRRSKLW KEMFSVKGSS SLPLWFSAHA FRSTIVPCN
101: CCSSIPEKGV YYVCNPSTRE YRKLPKSRER PVTRFYPDGE ATLVGLACDL SKNKFNVVLA GYHRSFGQRP DGSFICLVFD SESNKWRKFV SVLEECSFTH
201: MSKNQVVFVN GMLHWLMSGL CYILALDVEH DVWRKISLPD EIRIGNGGGN RVYLLESDGF LSVIQLSDVW MKIWKMSEYE TETWSVVDSI SLRCIKGLVP
301: GIFPICQTGE YVFLATHKQV LVYQRRSKLW KEMFSVKGSS SLPLWFSAHA FRSTIVPCN
Arabidopsis Description
F-box protein At5g49610 [Source:UniProtKB/Swiss-Prot;Acc:Q9FGY4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.