Factsheet for Bra020625.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003735.1-P
Bra008231.1-P
Bra014159.1-P
Bra015801.1-P
Bra018756.1-P
Bra018757.1-P
Bra039504.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G49610.1	Bra039504.1-P	AT1G10230.1	14749489
AT5G49610.1	Bra003735.1-P	AT1G75950.1	14749489
AT5G49610.1	Bra008231.1-P	AT1G75950.1	14749489
AT5G49610.1	Bra015801.1-P	AT1G75950.1	14749489
AT5G49610.1	Bra039504.1-P	AT2G03170.1	14749489
AT5G49610.1	Bra014159.1-P	AT3G60010.1	14749489
AT5G49610.1	Bra018756.1-P	AT3G60010.1	14749489
AT5G49610.1	Bra018757.1-P	AT3G60010.1	14749489

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY33892	Canola	cytosol	96.97	96.97
AT5G49610.1	Thale cress	cytosol	85.12	86.07
KRH36935	Soybean	cytosol	65.01	65.56
KRH11897	Soybean	cytosol	55.37	64.42
VIT_05s0077g00570.t01	Wine grape	cytosol	55.92	64.24
PGSC0003DMT400011756	Potato	cytosol	63.64	64.17
Solyc12g099170.1.1	Tomato	cytosol	29.48	61.49
GSMUA_Achr8P06320_001	Banana	cytosol, peroxisome, plastid	48.48	52.07

Protein Annotations

EnsemblPlants:Bra020625.1	EnsemblPlants:Bra020625.1-P	EnsemblPlantsGene:Bra020625	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:Gal_Oxase/kelch_b-propeller	InterPro:IPR001810
PANTHER:PTHR31264	PANTHER:PTHR31264:SF16	PFAM:PF12937	PFscan:PS50181	SMART:SM00256	SUPFAM:SSF50965
SUPFAM:SSF81383	TIGRFAMs:TIGR01640	UniParc:UPI0002546703	UniProt:M4DVT1	MapMan:19.2.2.8.1.4.6	:

Description

AT5G49610 (E=7e-183) | F-box family protein

Coordinates

chrA02:-:24128026..24129117

Molecular Weight (calculated)

41077.1 Da

IEP (calculated)

8.427

GRAVY (calculated)

0.118

Length

363 amino acids

Sequence
(BLAST)

001: MGNPKDPLFP DEVILQILAR LPVKSLFRFK SVCKAWCLLP SDAYFITLFN QLSVKEQTLV AEVPDSSSLI CVDSLRGVSE FSLEFLRDRV RIRASCNGLL
101: CCASVPEKGV YYVCNPSTRE FRVLPRSRER PVTRFYPDGE ATLVGLACDV SKKGFCVVMA GYHRLFGHRP DGSFVCLVFD SESNKWRKFV SALEGCGGFT
201: QMSKNQVVFV NGKLHWLMSG LCYVLALDLE HDVWRKVSLP DEISSGGGGG NRVYLLELDG FLSVIQLSDV WMKIWKMRDY ESEVWSVVDS ISLRCIKGLV
301: PGIFPICQTG EYVFLATHKQ VLVYQRRSKL WKEMFCVKGS YSLPVWFSAH AFRSTIVPCN YAL

Best Arabidopsis Sequence Match ( AT5G49610.1 )
(BLAST)

001: MDNQKGALFP DEVILQILAR LPVKSLFRFK SVCKSWYRLP SDKYFTSLFN QLSVKEQLLV AEVSDSSSLI CVDNLRGVSE LSLDFVRDRV RIRVSSNGLL
101: CCSSIPEKGV YYVCNPSTRE YRKLPKSRER PVTRFYPDGE ATLVGLACDL SKNKFNVVLA GYHRSFGQRP DGSFICLVFD SESNKWRKFV SVLEECSFTH
201: MSKNQVVFVN GMLHWLMSGL CYILALDVEH DVWRKISLPD EIRIGNGGGN RVYLLESDGF LSVIQLSDVW MKIWKMSEYE TETWSVVDSI SLRCIKGLVP
301: GIFPICQTGE YVFLATHKQV LVYQRRSKLW KEMFSVKGSS SLPLWFSAHA FRSTIVPCN

Arabidopsis Description

F-box protein At5g49610 [Source:UniProtKB/Swiss-Prot;Acc:Q9FGY4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.