Factsheet for Bra039504.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
golgi 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, golgi, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	golgi
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000874.1-P
Bra003700.1-P
Bra007086.1-P
Bra009129.1-P
Bra011854.1-P
Bra011856.1-P
Bra014802.1-P
Bra014991.1-P
Bra017339.1-P
Bra020625.1-P
Bra021702.1-P
Bra021730.1-P
Bra023531.1-P
Bra024867.1-P
Bra024868.1-P
Bra025177.1-P
Bra026645.1-P
Bra029137.1-P
Bra030038.1-P
Bra032820.1-P
Bra033585.1-P
Bra033628.1-P
Bra034254.1-P
Bra036257.1-P
Bra036266.1-P
Bra036353.1-P
Bra039878.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G10230.1	Bra034254.1-P	AT2G25490.1	12169662
AT1G10230.1	Bra007086.1-P	AT3G54650.1	19277118
AT1G10230.1	Bra014802.1-P	AT3G54650.1	19277118
AT1G10230.1	Bra000874.1-P	AT4G02570.1	16412087
AT1G10230.1	Bra036257.1-P	AT4G02570.1	16412087
AT1G10230.1	Bra033585.1-P	AT4G38940.1	12169662
AT1G10230.1	Bra020625.1-P	AT5G49610.1	14749489
AT2G03160.1	Bra030038.1-P	AT1G27340.1	12795696
AT2G03160.1	Bra032820.1-P	AT1G27340.1	12795696
AT2G03160.1	Bra039878.1-P	AT1G30950.1	12795696
AT2G03160.1	Bra003700.1-P	AT1G76920.1	12795696
AT2G03160.1	Bra000874.1-P	AT4G02570.1	16412087
AT2G03160.1	Bra036257.1-P	AT4G02570.1	16412087
AT2G03160.1	Bra029137.1-P	AT5G52120.1	12795696
AT2G03170.1	Bra030038.1-P	AT1G27340.1	12795696
AT2G03170.1	Bra032820.1-P	AT1G27340.1	12795696
AT2G03170.1	Bra039878.1-P	AT1G30950.1	12795696
AT2G03170.1	Bra003700.1-P	AT1G76920.1	12795696
AT2G03170.1	Bra024867.1-P	AT2G01620.1	12795696
AT2G03170.1	Bra024868.1-P	AT2G01620.1	12795696
AT2G03170.1	Bra026645.1-P	AT2G01620.1	12795696
AT2G03170.1	Bra009129.1-P	AT2G31470.1	18835996
AT2G03170.1	Bra021702.1-P	AT2G31470.1	18835996
AT2G03170.1	Bra021730.1-P	AT2G31470.1	18835996
AT2G03170.1	Bra017339.1-P	AT3G26000.1	12795696
AT2G03170.1	Bra025177.1-P	AT3G26000.1	12795696
AT2G03170.1	Bra036353.1-P	AT3G26000.1	12795696
AT2G03170.1	Bra036266.1-P	AT4G02440.1	16412087
AT2G03170.1	Bra000874.1-P	AT4G02570.1	16412087
AT2G03170.1	Bra036257.1-P	AT4G02570.1	16412087
AT2G03170.1	Bra011854.1-P	AT4G39550.1	14749489
AT2G03170.1	Bra011856.1-P	AT4G39550.1	14749489
AT2G03170.1	Bra033628.1-P	AT4G39550.1	14749489
AT2G03170.1	Bra020625.1-P	AT5G49610.1	14749489
AT2G03170.1	Bra029137.1-P	AT5G52120.1	12795696
AT2G03190.1	Bra014991.1-P	AT3G23880.1	21798944
AT2G03190.1	Bra000874.1-P	AT4G02570.1	16412087
AT2G03190.1	Bra036257.1-P	AT4G02570.1	16412087
AT2G03190.1	Bra023531.1-P	AT4G11590.1	12169662
AT3G25650.1	Bra036266.1-P	AT4G02440.1	16412087
AT3G25650.1	Bra000874.1-P	AT4G02570.1	16412087
AT3G25650.1	Bra036257.1-P	AT4G02570.1	16412087

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY14922	Canola	cytosol	95.86	96.43
CDX96963	Canola	cytosol	92.31	82.54
AT2G03170.1	Thale cress	cytosol	58.58	66.44
AT1G10230.1	Thale cress	cytosol	60.35	64.56
Bra008231.1-P	Field mustard	cytosol	55.03	58.12
AT2G03190.1	Thale cress	cytosol	57.99	57.65
Bra003735.1-P	Field mustard	cytosol	54.44	57.5
Bra015801.1-P	Field mustard	cytosol	54.44	57.14
AT3G25650.1	Thale cress	cytosol	59.76	57.06
Bra018756.1-P	Field mustard	cytosol	52.07	56.41
AT2G20160.1	Thale cress	cytosol	48.52	54.67
Bra025795.1-P	Field mustard	cytosol	51.48	54.04
Bra018757.1-P	Field mustard	cytosol	50.3	53.12
Bra017397.1-P	Field mustard	cytosol	49.7	52.83
Bra012214.1-P	Field mustard	cytosol	41.42	52.24
Bra014159.1-P	Field mustard	cytosol	49.11	52.2
Bra014519.1-P	Field mustard	cytosol	47.34	50.31
Bra012216.1-P	Field mustard	cytosol	44.38	46.88
AT2G03160.1	Thale cress	cytosol	54.44	46.0
Bra012213.1-P	Field mustard	cytosol	39.05	43.42

Protein Annotations

MapMan:19.2.2.8.1.1	Gene3D:3.30.710.10	EnsemblPlantsGene:Bra039504	EnsemblPlants:Bra039504.1	EnsemblPlants:Bra039504.1-P	GO:GO:0006511
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	UniProt:M4FEI3
PFAM:PF01466	PFAM:PF03931	PIRSF:PIRSF028729	PANTHER:PTHR11165	PANTHER:PTHR11165:SF89	InterPro:SKP1
InterPro:SKP1-like	InterPro:SKP1-like_dim_sf	InterPro:SKP1/BTB/POZ_sf	SMART:SM00512	SUPFAM:SSF54695	SUPFAM:SSF81382
InterPro:Skp1_comp_POZ	InterPro:Skp1_comp_dimer	UniParc:UPI000253E951	SEG:seg	:	:

Description

AT1G10230 (E=1e-046) ASK18 | ASK18 (ARABIDOPSIS SKP1-LIKE 18); protein binding / ubiquitin-protein ligase

Coordinates

chrScaffold000167:+:8900..9409

Molecular Weight (calculated)

18852.3 Da

IEP (calculated)

4.145

GRAVY (calculated)

-0.237

Length

169 amino acids

Sequence
(BLAST)

001: MAQNLVGLTE KLSLSSNKIV LTSSDGDSFE IGEAVARESH TIAEMLDAGC AGEIPLQNVT GKILDKVIDY CKTHVEAGPI FEEDEEEAKK KLKIWKAEFM
101: KVDLETISEL ILAANYLNLP GLLDLSCQTL ADYIKDKTPE DVREIFNIQN DFTPEEEAAV RKENVWAFE

Best Arabidopsis Sequence Match ( AT2G03170.1 )
(BLAST)

001: MSSNKIVLSS SDGESFEVEE AVARKLKIVE HMIEDDCVVT EVPLQNVTGK ILSIVVEYCK KHVVDEESDE FKTWDEEFMK KFDQPTVFQL LLAANYLNIK
101: GLLDLSAQTV ADRIKDKTPE EIREIFNIEN DFTPEEEAAV RKENAWAFE

Arabidopsis Description

ASK14SKP1-like protein 14 [Source:UniProtKB/Swiss-Prot;Acc:O81057]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.