Factsheet for Bra007086.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001736.1-P
Bra005565.1-P
Bra012213.1-P
Bra012214.1-P
Bra012216.1-P
Bra014159.1-P
Bra014519.1-P
Bra018756.1-P
Bra018757.1-P
Bra021808.1-P
Bra022391.1-P
Bra022897.1-P
Bra025795.1-P
Bra039504.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54650.1	Bra039504.1-P	AT1G10230.1	19277118
AT3G54650.1	Bra012213.1-P	AT2G25700.1	19277118
AT3G54650.1	Bra012214.1-P	AT2G25700.1	19277118
AT3G54650.1	Bra012216.1-P	AT2G25700.1	19277118
AT3G54650.1	Bra025795.1-P	AT2G25700.1	19277118
AT3G54650.1	Bra005565.1-P	AT2G32710.1	18948957
AT3G54650.1	Bra021808.1-P	AT2G32710.1	18948957
AT3G54650.1	Bra022897.1-P	AT2G32710.1	18948957
AT3G54650.1	Bra001736.1-P	AT3G19150.1	18948957
AT3G54650.1	Bra022391.1-P	AT3G19150.1	18948957
AT3G54650.1	Bra014519.1-P	AT3G21860.1	19277118
AT3G54650.1	Bra014159.1-P	AT3G60010.1	19277118
AT3G54650.1	Bra018756.1-P	AT3G60010.1	19277118
AT3G54650.1	Bra018757.1-P	AT3G60010.1	19277118

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX73462	Canola	plastid	92.93	96.25
CDX78253	Canola	plastid	88.1	91.09
AT3G54650.1	Thale cress	plastid	79.31	77.57
VIT_07s0141g00330.t01	Wine grape	plastid	60.52	61.15
KRH71335	Soybean	nucleus	58.97	57.97
PGSC0003DMT400051898	Potato	cytosol	58.28	57.29
Bra014802.1-P	Field mustard	plastid	77.07	57.09
KRH32101	Soybean	nucleus	57.76	56.59
Solyc06g084060.2.1	Tomato	cytosol, nucleus, plastid	57.59	56.51
Solyc09g065880.2.1	Tomato	nucleus	57.07	55.91
KRH67292	Soybean	cytosol	51.38	55.91
PGSC0003DMT400049672	Potato	nucleus	57.24	55.8
GSMUA_Achr4P21010_001	Banana	mitochondrion	46.9	55.62
GSMUA_Achr4P28520_001	Banana	cytosol, mitochondrion	44.66	55.22
Os03t0633400-01	Rice	extracellular, vacuole	31.9	55.06
KRG95622	Soybean	nucleus, plastid	56.38	54.5
GSMUA_Achr2P12640_001	Banana	plastid	51.38	53.02
KRG90050	Soybean	cytosol	5.17	51.72
Os12t0601000-00	Rice	plastid	47.07	48.75
TraesCS5A01G378400.1	Wheat	plastid	46.55	47.7
TraesCS5B01G382000.4	Wheat	plastid	43.1	47.62
TraesCS5D01G388400.1	Wheat	plastid	46.03	47.59
EER93780	Sorghum	plastid	47.76	46.63
Zm00001d030990_P001	Maize	cytosol	47.07	45.96
TraesCS5A01G058400.2	Wheat	plastid	46.72	45.32
TraesCS5B01G058300.1	Wheat	plastid	46.55	45.23
Zm00001d041414_P002	Maize	cytosol	46.38	44.83
TraesCS5D01G069500.1	Wheat	plastid	46.03	44.8
Zm00001d033321_P001	Maize	plastid	44.31	44.54
OQU79521	Sorghum	plastid	46.21	43.37
HORVU5Hr1G014320.7	Barley	plastid	46.55	39.53
HORVU5Hr1G093590.1	Barley	extracellular	39.48	39.08
HORVU5Hr1G093570.1	Barley	plastid	10.86	37.95
Os03t0633100-00	Rice	plastid	10.52	29.61

Protein Annotations

MapMan:19.2.2.8.1.4.6	Gene3D:3.80.10.10	EnsemblPlantsGene:Bra007086	EnsemblPlants:Bra007086.1	EnsemblPlants:Bra007086.1-P	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	InterPro:IPR032675
InterPro:LRR_dom_sf	UniProt:M4CS94	PFAM:PF00646	PANTHER:PTHR44840	PANTHER:PTHR44840:SF1	SUPFAM:SSF52047
SUPFAM:SSF81383	UniParc:UPI000254292B	SEG:seg	:	:	:

Description

AT3G54650 (E=1e-221) FBL17 | FBL17; ubiquitin-protein ligase

Coordinates

chrA09:-:27223835..27227459

Molecular Weight (calculated)

63280.7 Da

IEP (calculated)

7.997

GRAVY (calculated)

-0.085

Length

580 amino acids

Sequence
(BLAST)

001: MQPQPHIPPA TANAAISAAL KSQRARKNRG SYSCGRCGQP KKGHVCHLPP LDVPSTPIAP EPVTSIAAAA SSTRSTVVSL SSAPLRQSFT NLRRALSFDD
101: DVDARDETDL TDLSLDTEIV QPGRFHAVGL WEVLKRLPPS GLLMAARVCK GWRETARKMW KAAEELRIRV PKRAQIGYVG SLLQKCPGLV TLTLKLESDF
201: DATTLACIAF SCPNLEVLEI LTCGAAVNRI SGDELGRFVS NKRGLTSLKM EGCSNLGGFS LTSTSLSTLW LSDLHSLSKM IFNCPNLIEI SLEFSQQEGD
301: STDLVTMVDG LGRTCTRLQN IHIASLKLSH IVVLALTAVN FRCLRMLSLV LGIDITDASV DAISSSYTNL ELLDLSGSSI TDTGLGMICD VLPDTLSKLL
401: VALCPNITSS GIQFATAQLP LLELMDCGMT VSDPNSDNPL TPQKTSGYNQ KMFIKHKRMK KLSLWGCSSL DALFLNCPEL RDLNLNSCNN LQPESLVIQC
501: PKLEIVHASG CQKLLTVAIR KQISENFAAG ENHMTRKRLA DGSKRIQAPP SLYQETREDD ENYPAKKRRK IEKEVCTIID

Best Arabidopsis Sequence Match ( AT3G54650.1 )
(BLAST)

001: MQPQPHISPN TATAAISAAL ESQRSRKNRG SYNCGRCGQP KKGHVCLLTA PPDIPTTPIA SEPVSCISAA ASSSRSTVLS LTAAPSSRQT FTHLRRALSF
101: DDVDARNSLD ESDLDAASMD LDLQLDTDIV QPGRFHAVGL WEVLKRLPPS SLLMAARVCK GWRETSRKMW KAAEELRIRV PERAQIGYIG SLLQKCPRLI
201: RLSLKIESDF DATTLACIAF SCPNLEVLEI TTSGAAVNRI SGDELSRFVA NKRGLTSLKM EGCSNLGGFS LSSSSLSTLW LSDLHSLSKM IFNCPNLTEI
301: SLEFSRQEDD STDLVTMVDG LGRTCTRLQN IHIASLKLSH TVVLSLTAVN FRYLRMLSLV LGINITDASV AAISSGYKNL ELLDLSGSSI TDTGLGMICD
401: VLPDTLSKLL VALCPNITSS GIQFATAQLP LLELMDCGMT VSDPNSDNPT FVENPSPHKT PGYNQKMFIK HKRLKKLSLW GCSSLDALFL NCPELMDLNL
501: NLCSNLHPES LVLQCPKLQL VYASGCQGLL TGAIRKQVSE NFSAGENHMP RKRLADASKR IQALPSLYQE TREDGIYAGK RRKLEKEMCT IIH

Arabidopsis Description

FBL17F-box/LRR-repeat protein 17 [Source:UniProtKB/Swiss-Prot;Acc:Q8W104]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.