Factsheet for TraesCS5A01G058400.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1
plastid 3
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
iPSORT:	secretory
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G151400.1
TraesCS1B01G168900.1
TraesCS1D01G148400.2
TraesCS4D01G332500.1
TraesCS5A01G240600.1
TraesCS5A01G506500.1
TraesCS5B01G238600.1
TraesCS5D01G247100.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54650.1	TraesCS1A01G151400.1	AT2G32710.1	18948957
AT3G54650.1	TraesCS1B01G168900.1	AT2G32710.1	18948957
AT3G54650.1	TraesCS1D01G148400.2	AT2G32710.1	18948957
AT3G54650.1	TraesCS4D01G332500.1	AT2G32710.1	18948957
AT3G54650.1	TraesCS5A01G506500.1	AT2G32710.1	18948957
AT3G54650.1	TraesCS5A01G240600.1	AT3G19150.1	18948957
AT3G54650.1	TraesCS5B01G238600.1	AT3G19150.1	18948957
AT3G54650.1	TraesCS5D01G247100.1	AT3G19150.1	18948957

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G058300.1	Wheat	plastid	92.98	93.13
TraesCS5D01G069500.1	Wheat	plastid	92.47	92.79
HORVU5Hr1G014320.7	Barley	plastid	91.14	79.8
Os12t0601000-00	Rice	plastid	71.91	76.79
Zm00001d030990_P001	Maize	cytosol	69.9	70.37
Zm00001d041414_P002	Maize	cytosol	67.89	67.67
OQU79521	Sorghum	plastid	67.89	65.7
TraesCS5A01G378400.1	Wheat	plastid	60.54	63.96
GSMUA_Achr4P21010_001	Banana	mitochondrion	47.32	57.87
GSMUA_Achr4P28520_001	Banana	cytosol, mitochondrion	44.82	57.14
GSMUA_Achr2P12640_001	Banana	plastid	53.01	56.41
VIT_07s0141g00330.t01	Wine grape	plastid	48.66	50.7
CDY64339	Canola	plastid	47.32	50.0
KRG90050	Soybean	cytosol	4.85	50.0
KRH67292	Soybean	cytosol	43.14	48.41
CDX73462	Canola	plastid	45.32	48.39
CDX78253	Canola	plastid	45.32	48.31
PGSC0003DMT400051898	Potato	cytosol	46.82	47.46
Solyc09g065880.2.1	Tomato	nucleus	46.82	47.3
KRH71335	Soybean	nucleus	46.66	47.29
Solyc06g084060.2.1	Tomato	cytosol, nucleus, plastid	46.66	47.21
CDY55831	Canola	mitochondrion	39.13	47.18
KRG95622	Soybean	nucleus, plastid	47.32	47.17
PGSC0003DMT400049672	Potato	nucleus	46.66	46.89
Bra007086.1-P	Field mustard	plastid	45.32	46.72
AT3G54650.1	Thale cress	plastid	45.65	46.04
KRH32101	Soybean	nucleus	45.32	45.78
Bra014802.1-P	Field mustard	plastid	46.49	35.5

Protein Annotations

EnsemblPlants:TraesCS5A01G058400.2	EnsemblPlantsGene:TraesCS5A01G058400	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf	PANTHER:PTHR44840
PANTHER:PTHR44840:SF2	PFAM:PF00646	SEG:seg	SUPFAM:SSF52047	SUPFAM:SSF81383	MapMan:19.2.2.8.1.4.6

Description

No Description!

Coordinates

chr5A:+:57362624..57367260

Molecular Weight (calculated)

64082.0 Da

IEP (calculated)

8.205

GRAVY (calculated)

0.060

Length

598 amino acids

Sequence
(BLAST)

001: MASSDAVSVV PAPDAAAAAP ALPAVAKKRG SYNCGRCGLP KKGHVCSIPG PPAAGAGTAA AAPEHKPRRA LHFDEAAAAG ALDVMPVAAA YPAPHRPPEK
101: KPRVDVVDVD DSEPESGGVG RPGLVAVGSG VRVPGEVVIE VLRRLAPRAV AASAAVSRGW RDCARRVWWG AEELRLRAAG VSTIGTLLPR CPALSRLVLR
201: MESDVDATML ACLAFSCPNM QSLEISMADS AVNRMTGDEL TRFISEKKSL TVLKVDRCSG LGFLNINSTS LSTLWLSDLS SITKYVINCP NLSELSLIFS
301: QQDNDSTDLI SMMDSLGRTC LNLRKLHISS IHLCNEAVFA LGSANLRGLC MLSLLLGKKI TDAAVASIVR SFTSLELLDL SGSCITDNGL GMISKAFPDT
401: LTRLLLAMCP NITSCGVQVA AVQLPLLQLM DCGKSLCANV QPEAPRSYFG DLNGGIRFCS KLQVTRKQQP TYQKLIIKHA NLKKLSLWGC SAIDALYVNC
501: PELSDLNLNS CINLNPERLL LQCPSLKDVH VTGCRDMLIG AIRNQVLNEF AAGEPRMPCK RLADGSKRVQ VPQFMPEQQF EDEKWCGESR RSQCAVHI

Best Arabidopsis Sequence Match ( AT3G54650.1 )
(BLAST)

001: MQPQPHISPN TATAAISAAL ESQRSRKNRG SYNCGRCGQP KKGHVCLLTA PPDIPTTPIA SEPVSCISAA ASSSRSTVLS LTAAPSSRQT FTHLRRALSF
101: DDVDARNSLD ESDLDAASMD LDLQLDTDIV QPGRFHAVGL WEVLKRLPPS SLLMAARVCK GWRETSRKMW KAAEELRIRV PERAQIGYIG SLLQKCPRLI
201: RLSLKIESDF DATTLACIAF SCPNLEVLEI TTSGAAVNRI SGDELSRFVA NKRGLTSLKM EGCSNLGGFS LSSSSLSTLW LSDLHSLSKM IFNCPNLTEI
301: SLEFSRQEDD STDLVTMVDG LGRTCTRLQN IHIASLKLSH TVVLSLTAVN FRYLRMLSLV LGINITDASV AAISSGYKNL ELLDLSGSSI TDTGLGMICD
401: VLPDTLSKLL VALCPNITSS GIQFATAQLP LLELMDCGMT VSDPNSDNPT FVENPSPHKT PGYNQKMFIK HKRLKKLSLW GCSSLDALFL NCPELMDLNL
501: NLCSNLHPES LVLQCPKLQL VYASGCQGLL TGAIRKQVSE NFSAGENHMP RKRLADASKR IQALPSLYQE TREDGIYAGK RRKLEKEMCT IIH

Arabidopsis Description

FBL17F-box/LRR-repeat protein 17 [Source:UniProtKB/Swiss-Prot;Acc:Q8W104]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.