Factsheet for PGSC0003DMT400049672

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400019919
PGSC0003DMT400040785
PGSC0003DMT400066394
PGSC0003DMT400076291

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54650.1	PGSC0003DMT400019919	AT2G32710.1	18948957
AT3G54650.1	PGSC0003DMT400076291	AT2G32710.1	18948957
AT3G54650.1	PGSC0003DMT400040785	AT3G19150.1	18948957
AT3G54650.1	PGSC0003DMT400066394	AT3G19150.1	18948957

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g065880.2.1	Tomato	nucleus	94.45	94.93
PGSC0003DMT400051898	Potato	cytosol	72.27	72.88
VIT_07s0141g00330.t01	Wine grape	plastid	63.7	66.03
KRH67292	Soybean	cytosol	56.47	63.04
KRH71335	Soybean	nucleus	61.51	62.03
KRH32101	Soybean	nucleus	60.5	60.81
KRG95622	Soybean	nucleus, plastid	59.5	59.0
CDX73462	Canola	plastid	55.29	58.75
GSMUA_Achr4P21010_001	Banana	mitochondrion	47.9	58.28
GSMUA_Achr2P12640_001	Banana	plastid	54.62	57.83
GSMUA_Achr4P28520_001	Banana	cytosol, mitochondrion	45.55	57.78
CDX78253	Canola	plastid	54.45	57.75
AT3G54650.1	Thale cress	plastid	57.31	57.5
CDY64339	Canola	plastid	54.45	57.24
Bra007086.1-P	Field mustard	plastid	55.8	57.24
CDY55831	Canola	mitochondrion	46.39	55.65
Os03t0633400-01	Rice	extracellular, vacuole	31.26	55.36
KRG90050	Soybean	cytosol	5.21	53.45
TraesCS5D01G388400.1	Wheat	plastid	47.4	50.27
Os12t0601000-00	Rice	plastid	47.23	50.18
TraesCS5A01G378400.1	Wheat	plastid	47.73	50.18
TraesCS5B01G382000.4	Wheat	plastid	44.2	50.1
Zm00001d030990_P001	Maize	cytosol	48.24	48.32
EER93780	Sorghum	plastid	47.9	47.98
Zm00001d041414_P002	Maize	cytosol	48.07	47.67
TraesCS5A01G058400.2	Wheat	plastid	46.89	46.66
Zm00001d033321_P001	Maize	plastid	45.21	46.62
TraesCS5B01G058300.1	Wheat	plastid	46.55	46.4
TraesCS5D01G069500.1	Wheat	plastid	46.39	46.31
OQU79521	Sorghum	plastid	46.72	44.98
Bra014802.1-P	Field mustard	plastid	54.62	41.51
HORVU5Hr1G014320.7	Barley	plastid	47.56	41.43
HORVU5Hr1G093570.1	Barley	plastid	11.26	40.36
HORVU5Hr1G093590.1	Barley	extracellular	39.5	40.1
Os03t0633100-00	Rice	plastid	12.61	36.41

Protein Annotations

EntrezGene:102580408	MapMan:19.2.2.8.1.4.6	Gene3D:3.80.10.10	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf	UniProt:M1BP54
PFAM:PF00646	EnsemblPlantsGene:PGSC0003DMG400019300	PGSC:PGSC0003DMG400019300	EnsemblPlants:PGSC0003DMT400049672	PFscan:PS50181	PANTHER:PTHR44840
PANTHER:PTHR44840:SF1	SMART:SM00256	SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI0002958252	RefSeq:XP_006349746.1
SEG:seg	:	:	:	:	:

Description

F-box/leucine rich repeat protein [Source:PGSC_GENE;Acc:PGSC0003DMG400019300]

Coordinates

chr9:-:48769171..48774364

Molecular Weight (calculated)

64939.3 Da

IEP (calculated)

6.790

GRAVY (calculated)

-0.147

Length

595 amino acids

Sequence
(BLAST)

001: MEGRHSHPST PIPDDFVQKR GKKRGSYNCG RCGLPKKGHV CDLTKEISEV PTPTSSDAKS FVLPSPLSVV RTKPTPPLPP PRQAVPQLRR ALSFDDIGVT
101: DESPGSDDDE GVDEGEFLDF ESELDLGGSG KLPANCLWEV FKRLPPSSLL SSAKVCKGWR DVSRRIWKSA EELRLEVPVK AQIGLVGSVL QKCPGLVKLS
201: LRMKSDVDAT MLACIAFSCP NLDSLEILTS ETSVNRITGD ELGRFVADKR CLANLKMEGC SNLGGFTLSS TSLSTLCLSE LFCHSKMVFN CPNLKEISLI
301: FSRQENENTD LTAMVNGLGR SCPRLQNIHV ASVRLTHAVV LALTAANLRG LRMLSLVLGS EITDASVAAI ASSYSRLELL DLSGSSISDS GIGMICNVFP
401: ETLLKLLLAL CPNITSSGIQ FAAAQLPNLE LMDCGMSICD PDLDSPAAQE NDTVELQRTP SSKLHLIYQK LIIKHSHLKK FSLWGCSGLD ALYLNCPELS
501: DLNLNSCMNL NPGRLLLQCP NLESVHASGC QDTLVETLQN QVCGDFMAED DHYPCKRLPD GSKRIRVPHS YSPQPFDDGK RKRRLSKQHC AVLVY

Best Arabidopsis Sequence Match ( AT3G54650.1 )
(BLAST)

001: MQPQPHISPN TATAAISAAL ESQRSRKNRG SYNCGRCGQP KKGHVCLLTA PPDIPTTPIA SEPVSCISAA ASSSRSTVLS LTAAPSSRQT FTHLRRALSF
101: DDVDARNSLD ESDLDAASMD LDLQLDTDIV QPGRFHAVGL WEVLKRLPPS SLLMAARVCK GWRETSRKMW KAAEELRIRV PERAQIGYIG SLLQKCPRLI
201: RLSLKIESDF DATTLACIAF SCPNLEVLEI TTSGAAVNRI SGDELSRFVA NKRGLTSLKM EGCSNLGGFS LSSSSLSTLW LSDLHSLSKM IFNCPNLTEI
301: SLEFSRQEDD STDLVTMVDG LGRTCTRLQN IHIASLKLSH TVVLSLTAVN FRYLRMLSLV LGINITDASV AAISSGYKNL ELLDLSGSSI TDTGLGMICD
401: VLPDTLSKLL VALCPNITSS GIQFATAQLP LLELMDCGMT VSDPNSDNPT FVENPSPHKT PGYNQKMFIK HKRLKKLSLW GCSSLDALFL NCPELMDLNL
501: NLCSNLHPES LVLQCPKLQL VYASGCQGLL TGAIRKQVSE NFSAGENHMP RKRLADASKR IQALPSLYQE TREDGIYAGK RRKLEKEMCT IIH

Arabidopsis Description

FBL17F-box/LRR-repeat protein 17 [Source:UniProtKB/Swiss-Prot;Acc:Q8W104]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.