CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 7
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER91497
EER95545
EER99015

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54650.1	EER91497	AT2G32710.1	18948957
AT3G54650.1	EER95545	AT2G32710.1	18948957
AT3G54650.1	EER99015	AT3G19150.1	18948957

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d030990_P001	Maize	cytosol	74.27	77.27
Zm00001d041414_P002	Maize	cytosol	72.98	75.17
Os12t0601000-00	Rice	plastid	64.24	70.89
TraesCS5A01G058400.2	Wheat	plastid	65.7	67.89
TraesCS5B01G058300.1	Wheat	plastid	65.21	67.5
TraesCS5D01G069500.1	Wheat	plastid	64.72	67.11
HORVU5Hr1G014320.7	Barley	plastid	65.37	59.15
EER93780	Sorghum	plastid	56.31	58.59
GSMUA_Achr4P28520_001	Banana	cytosol, mitochondrion	42.88	56.5
GSMUA_Achr4P21010_001	Banana	mitochondrion	43.37	54.81
GSMUA_Achr2P12640_001	Banana	plastid	49.03	53.91
VIT_07s0141g00330.t01	Wine grape	plastid	47.41	51.05
CDY64339	Canola	plastid	44.5	48.59
KRG90050	Soybean	cytosol	4.53	48.28
KRH67292	Soybean	cytosol	41.42	48.03
CDX73462	Canola	plastid	43.04	47.5
KRH71335	Soybean	nucleus	45.31	47.46
Solyc06g084060.2.1	Tomato	cytosol, nucleus, plastid	45.15	47.21
CDY55831	Canola	mitochondrion	37.86	47.18
Solyc09g065880.2.1	Tomato	nucleus	45.15	47.13
PGSC0003DMT400051898	Potato	cytosol	44.98	47.12
CDX78253	Canola	plastid	42.72	47.06
KRG95622	Soybean	nucleus, plastid	45.47	46.83
PGSC0003DMT400049672	Potato	nucleus	44.98	46.72
KRH32101	Soybean	nucleus	44.34	46.28
Bra007086.1-P	Field mustard	plastid	43.37	46.21
AT3G54650.1	Thale cress	plastid	43.53	45.36
Bra014802.1-P	Field mustard	plastid	44.82	35.38

Protein Annotations

MapMan:19.2.2.8.1.4.6	Gene3D:3.80.10.10	UniProt:A0A1Z5R7V7	ncoils:Coil	InterPro:F-box-like_dom_sf	InterPro:F-box_dom
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf
EnsemblPlants:OQU79521	ProteinID:OQU79521	ProteinID:OQU79521.1	PFAM:PF00646	PANTHER:PTHR44840	PANTHER:PTHR44840:SF2
EnsemblPlantsGene:SORBI_3008G156600	SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI000B426090	SEG:seg	:

Description

hypothetical protein

Coordinates

chr8:+:58901348..58906162

Molecular Weight (calculated)

66421.3 Da

IEP (calculated)

8.254

GRAVY (calculated)

-0.095

Length

618 amino acids

Sequence
(BLAST)

001: MASDAASAAP VPATAKPAPA KRRGSYNCGR CGLPKKGHVC SVPGPASSSA AASTGGGDKA GEPQPQPPPQ QQTKPRRALQ FDDPSPPAAS AVVLDAMPLA
101: VAAPPLPRTP PRKKARAEVV DVEEEEEKEE DEDDDGGPPL PWVEVCAGRR APGEVLVDVL RRLSPRGVAA AAGVSRGWRE CARHLWGDAR EVRLRASGVR
201: PVAALMARCP VLARLVLAMD SDVDATLLAC IAFSCPNLQS LDISLVNNAA NRITGDELSR FVSEKRSLSV LTLDGCSSLG FVNVNSSSLS TLRLSGLCSL
301: TKAVMNCPNL NELSLIFAAQ NNDSTDLVAL MDSLGRTCPN LRNLHISSIR LCNEAVFALE SANLRGLRML SFLQGSKITD AAVASIVRSY VSLELLDLSG
401: SAITDNGLGM ISNAFPNTLT FLLLAKCTNI TSFGVQVAAA QLPLLRLMDC GQSICANPQP EAGRSYYFGD LTGGIKFCSK LPVQRKQQTT CQKLIIKHNN
501: LKKLSLWGCS AIDALYVNCP ELVDLNLNLC TNLHPERLLI QCPKLKDVHV KGCRDMLIGA VRNQVLNEFA AIEPQLPYKR LADGSKRVHV PHFMIEQLEE
601: QEKLGRPRKS QCTVHPNW

Best Arabidopsis Sequence Match ( AT3G54650.1 )
(BLAST)

001: MQPQPHISPN TATAAISAAL ESQRSRKNRG SYNCGRCGQP KKGHVCLLTA PPDIPTTPIA SEPVSCISAA ASSSRSTVLS LTAAPSSRQT FTHLRRALSF
101: DDVDARNSLD ESDLDAASMD LDLQLDTDIV QPGRFHAVGL WEVLKRLPPS SLLMAARVCK GWRETSRKMW KAAEELRIRV PERAQIGYIG SLLQKCPRLI
201: RLSLKIESDF DATTLACIAF SCPNLEVLEI TTSGAAVNRI SGDELSRFVA NKRGLTSLKM EGCSNLGGFS LSSSSLSTLW LSDLHSLSKM IFNCPNLTEI
301: SLEFSRQEDD STDLVTMVDG LGRTCTRLQN IHIASLKLSH TVVLSLTAVN FRYLRMLSLV LGINITDASV AAISSGYKNL ELLDLSGSSI TDTGLGMICD
401: VLPDTLSKLL VALCPNITSS GIQFATAQLP LLELMDCGMT VSDPNSDNPT FVENPSPHKT PGYNQKMFIK HKRLKKLSLW GCSSLDALFL NCPELMDLNL
501: NLCSNLHPES LVLQCPKLQL VYASGCQGLL TGAIRKQVSE NFSAGENHMP RKRLADASKR IQALPSLYQE TREDGIYAGK RRKLEKEMCT IIH

Arabidopsis Description

FBL17F-box/LRR-repeat protein 17 [Source:UniProtKB/Swiss-Prot;Acc:Q8W104]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.