Factsheet for Zm00001d030990_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d014046_P001
Zm00001d027585_P001
Zm00001d032732_P002
Zm00001d048363_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54650.1	Zm00001d014046_P001	AT2G32710.1	18948957
AT3G54650.1	Zm00001d027585_P001	AT2G32710.1	18948957
AT3G54650.1	Zm00001d032732_P002	AT2G32710.1	18948957
AT3G54650.1	Zm00001d048363_P001	AT2G32710.1	18948957

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d041414_P002	Maize	cytosol	80.81	80.0
OQU79521	Sorghum	plastid	77.27	74.27
Os12t0601000-00	Rice	plastid	69.19	73.39
TraesCS5A01G058400.2	Wheat	plastid	70.37	69.9
TraesCS5B01G058300.1	Wheat	plastid	69.7	69.35
TraesCS5D01G069500.1	Wheat	plastid	69.36	69.13
HORVU5Hr1G014320.7	Barley	plastid	70.03	60.91
GSMUA_Achr4P28520_001	Banana	cytosol, mitochondrion	47.81	60.55
Zm00001d033321_P001	Maize	plastid	56.73	58.41
GSMUA_Achr4P21010_001	Banana	mitochondrion	47.98	58.28
GSMUA_Achr2P12640_001	Banana	plastid	54.21	57.3
VIT_07s0141g00330.t01	Wine grape	plastid	51.68	53.48
KRG90050	Soybean	cytosol	5.05	51.72
CDY64339	Canola	plastid	47.98	50.35
KRH71335	Soybean	nucleus	49.83	50.17
KRH67292	Soybean	cytosol	44.61	49.72
PGSC0003DMT400051898	Potato	cytosol	49.33	49.66
Solyc06g084060.2.1	Tomato	cytosol, nucleus, plastid	49.16	49.41
KRG95622	Soybean	nucleus, plastid	49.49	49.0
Solyc09g065880.2.1	Tomato	nucleus	48.82	48.99
CDX78253	Canola	plastid	46.13	48.84
CDY55831	Canola	mitochondrion	40.74	48.79
KRH32101	Soybean	nucleus	48.48	48.65
CDX73462	Canola	plastid	45.79	48.57
PGSC0003DMT400049672	Potato	nucleus	48.32	48.24
Bra007086.1-P	Field mustard	plastid	45.96	47.07
AT3G54650.1	Thale cress	plastid	46.97	47.05
Bra014802.1-P	Field mustard	plastid	47.47	36.02

Protein Annotations

EnsemblPlants:Zm00001d030990_P001	EnsemblPlants:Zm00001d030990_T001	EnsemblPlantsGene:Zm00001d030990	EntrezGene:103640570	Gene3D:3.80.10.10	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	InterPro:IPR032675
InterPro:LRR_dom_sf	PANTHER:PTHR44840	PANTHER:PTHR44840:SF2	PFAM:PF00646	ProteinID:ONM01866.1	SEG:seg
SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI0002215BF4	UniProt:A0A1D6KFH5	MapMan:19.2.2.8.1.4.6	:

Description

F-box/LRR-repeat protein 17

Coordinates

chr1:+:172352530..172357352

Molecular Weight (calculated)

63504.0 Da

IEP (calculated)

8.156

GRAVY (calculated)

-0.065

Length

594 amino acids

Sequence
(BLAST)

001: MASDAPAPAA AQPKRRGSYN CGRCGLPKKG HVCTVPRLAA AGGGDKAGEQ QPPPPPPQTK PRRALQFDDP PAASDVLLDA VPLAAAAPGK KARVEAVDVE
101: EEEDGGGDYD PPPLDWWVEA GAGRRAPGEV LVEVLRRMPP RAVAAAAGVS RGWRECARRV WRAAEEVRLR AAGVGPVGAL MARCPALARL VLRMDSDVDA
201: TMLACIAFSC PNLQSLDISM ANSAVNRITG DELSRFVSEK RSLSVLKLDG CSSLGFLNIS SSSLSTLWMS GLCSLTKAVM NCPNLTELSL DFPKQNNDST
301: DLAALIDSLG RTCPNLRNMH VSSIRLCNEA VFALESANLR GLCMLSLVLG SKITDAAVAS IVRSYSSLEL LDLSGSGITD NGLGMISKAF PDTLTRLLLA
401: LCPNITSSGV QVAAAQLPLL RLMDCGNSIC ANPQPEAGRS YFGDLTGGIK FCSKLPVQKK QQQQQAACQK LIIKHGALKK LSLWGCSAID ALYVNCPELV
501: DLNLNACTNL HPERLLIQCP KLKDVHVSGC RDMLIGAVRN QVLNEFAAAE PRLPCKRLAD GSKRVHVPHF MIEQLEEQEK WGGPRKSQCT VHLT

Best Arabidopsis Sequence Match ( AT3G54650.1 )
(BLAST)

001: MQPQPHISPN TATAAISAAL ESQRSRKNRG SYNCGRCGQP KKGHVCLLTA PPDIPTTPIA SEPVSCISAA ASSSRSTVLS LTAAPSSRQT FTHLRRALSF
101: DDVDARNSLD ESDLDAASMD LDLQLDTDIV QPGRFHAVGL WEVLKRLPPS SLLMAARVCK GWRETSRKMW KAAEELRIRV PERAQIGYIG SLLQKCPRLI
201: RLSLKIESDF DATTLACIAF SCPNLEVLEI TTSGAAVNRI SGDELSRFVA NKRGLTSLKM EGCSNLGGFS LSSSSLSTLW LSDLHSLSKM IFNCPNLTEI
301: SLEFSRQEDD STDLVTMVDG LGRTCTRLQN IHIASLKLSH TVVLSLTAVN FRYLRMLSLV LGINITDASV AAISSGYKNL ELLDLSGSSI TDTGLGMICD
401: VLPDTLSKLL VALCPNITSS GIQFATAQLP LLELMDCGMT VSDPNSDNPT FVENPSPHKT PGYNQKMFIK HKRLKKLSLW GCSSLDALFL NCPELMDLNL
501: NLCSNLHPES LVLQCPKLQL VYASGCQGLL TGAIRKQVSE NFSAGENHMP RKRLADASKR IQALPSLYQE TREDGIYAGK RRKLEKEMCT IIH

Arabidopsis Description

FBL17F-box/LRR-repeat protein 17 [Source:UniProtKB/Swiss-Prot;Acc:Q8W104]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.