Factsheet for GSMUA_Achr4P21010_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
mitochondrion 5
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr1P00900_001
GSMUA_Achr1P20410_001
GSMUA_Achr2P11790_001
GSMUA_Achr2P22370_001
GSMUA_Achr4P26490_001
GSMUA_Achr5P12920_001
GSMUA_Achr5P20430_001
GSMUA_Achr5P21770_001
GSMUA_Achr6P36640_001
GSMUA_Achr8P12510_001
GSMUA_Achr9P27040_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54650.1	GSMUA_Achr11P...	AT2G32710.1	18948957
AT3G54650.1	GSMUA_Achr11P...	AT2G32710.1	18948957
AT3G54650.1	GSMUA_Achr1P00900_001	AT2G32710.1	18948957
AT3G54650.1	GSMUA_Achr1P20410_001	AT2G32710.1	18948957
AT3G54650.1	GSMUA_Achr2P11790_001	AT2G32710.1	18948957
AT3G54650.1	GSMUA_Achr4P26490_001	AT2G32710.1	18948957
AT3G54650.1	GSMUA_Achr5P12920_001	AT2G32710.1	18948957
AT3G54650.1	GSMUA_Achr5P20430_001	AT2G32710.1	18948957
AT3G54650.1	GSMUA_Achr5P21770_001	AT2G32710.1	18948957
AT3G54650.1	GSMUA_Achr6P36640_001	AT2G32710.1	18948957
AT3G54650.1	GSMUA_Achr8P12510_001	AT2G32710.1	18948957
AT3G54650.1	GSMUA_Achr10P...	AT3G19150.1	18948957
AT3G54650.1	GSMUA_Achr10P...	AT3G19150.1	18948957
AT3G54650.1	GSMUA_Achr2P22370_001	AT3G19150.1	18948957
AT3G54650.1	GSMUA_Achr9P27040_001	AT3G19150.1	18948957

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P28520_001	Banana	cytosol, mitochondrion	74.44	77.61
GSMUA_Achr2P12640_001	Banana	plastid	79.55	69.22
Os03t0633400-01	Rice	extracellular, vacuole	45.19	65.77
Os12t0601000-00	Rice	plastid	59.1	51.61
VIT_07s0141g00330.t01	Wine grape	plastid	60.33	51.39
TraesCS5D01G388400.1	Wheat	plastid	58.49	50.98
TraesCS5A01G378400.1	Wheat	plastid	58.69	50.71
CDY55831	Canola	mitochondrion	50.72	50.0
TraesCS5B01G382000.4	Wheat	plastid	53.17	49.52
CDX78253	Canola	plastid	56.03	48.84
PGSC0003DMT400051898	Potato	cytosol	58.9	48.81
CDX73462	Canola	plastid	55.62	48.57
Solyc06g084060.2.1	Tomato	cytosol, nucleus, plastid	58.69	48.56
Solyc09g065880.2.1	Tomato	nucleus	58.69	48.48
EER93780	Sorghum	plastid	58.49	48.15
Zm00001d030990_P001	Maize	cytosol	58.28	47.98
HORVU5Hr1G093590.1	Barley	extracellular	57.46	47.95
PGSC0003DMT400049672	Potato	nucleus	58.28	47.9
CDY64339	Canola	plastid	55.42	47.88
KRH67292	Soybean	cytosol	51.74	47.47
TraesCS5A01G058400.2	Wheat	plastid	57.87	47.32
KRH71335	Soybean	nucleus	56.85	47.12
TraesCS5B01G058300.1	Wheat	plastid	57.46	47.07
TraesCS5D01G069500.1	Wheat	plastid	57.26	46.98
Bra007086.1-P	Field mustard	plastid	55.62	46.9
KRG95622	Soybean	nucleus, plastid	57.26	46.67
KRH32101	Soybean	nucleus	56.24	46.45
AT3G54650.1	Thale cress	plastid	56.03	46.21
Zm00001d033321_P001	Maize	plastid	54.19	45.93
Zm00001d041414_P002	Maize	cytosol	55.62	45.33
OQU79521	Sorghum	plastid	54.81	43.37
KRG90050	Soybean	cytosol	5.11	43.1
HORVU5Hr1G014320.7	Barley	plastid	58.28	41.73
Bra014802.1-P	Field mustard	plastid	54.4	33.97
HORVU5Hr1G093570.1	Barley	plastid	7.16	21.08
Os03t0633100-00	Rice	plastid	7.98	18.93

Protein Annotations

MapMan:19.2.2.8.1.4.6	Gene3D:3.80.10.10	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	EnsemblPlantsGene:GSMUA_Achr4G21010_001	EnsemblPlants:GSMUA_Achr4P21010_001	EnsemblPlants:GSMUA_Achr4T21010_001	InterPro:IPR001810	InterPro:IPR032675
InterPro:LRR_dom_sf	UniProt:M0SQR4	PFAM:PF00646	PANTHER:PTHR44840	SUPFAM:SSF52047	SUPFAM:SSF81383
UniParc:UPI000295BED6	SEG:seg	:	:	:	:

Description

F-box/LRR-repeat protein 17 [Source:GMGC_GENE;Acc:GSMUA_Achr4G21010_001]

Coordinates

chr4:+:21544801..21551344

Molecular Weight (calculated)

54513.0 Da

IEP (calculated)

8.205

GRAVY (calculated)

0.060

Length

489 amino acids

Sequence
(BLAST)

001: MVEVLKRLSP MELMRAAAVC RGWRGCVRRM WRSAEELRLS VSPRSQIGFV GSLLQKCAGL SRLTLRMESD VDATMLACVV FSLPNLEAFE INMTKNTVNR
101: ITGNELSRFV SEKRCLTTLK VEGCTNIGFL NISSSSLSTL WLSNLYCISK MVFKCPNLRE ISLDFTRQEN DSTDLVTMME NLGSSCPRLT NIHIASIQLC
201: NEAVLALTSA NLRCLRMLSL VLGSRITDAA VTSIVSCYTS LELLDLSGSS ISDSGIRMIC KVLPETLSRL LLALCPNITS SGIQFAAVQL PLLQLIDCGM
301: SISDTGYHYE SSQEKLCPNI ERSGEYTMCQ KLSTMKSQRI YQKLIIKHAN LRKLSLWGCS GLDALYLNCP ELNDLNLNSC TNLHPERLLL RCPNLKDIHA
401: SGCQDMLIGA IRNQVLNEFV AVENHLPCKR LADGSKRVQV PLFIQQISDG KKQKRRQMTQ CIVHHVGEHS PCFDQIIALC MFPIDSSQP

Best Arabidopsis Sequence Match ( AT3G54650.1 )
(BLAST)

001: MQPQPHISPN TATAAISAAL ESQRSRKNRG SYNCGRCGQP KKGHVCLLTA PPDIPTTPIA SEPVSCISAA ASSSRSTVLS LTAAPSSRQT FTHLRRALSF
101: DDVDARNSLD ESDLDAASMD LDLQLDTDIV QPGRFHAVGL WEVLKRLPPS SLLMAARVCK GWRETSRKMW KAAEELRIRV PERAQIGYIG SLLQKCPRLI
201: RLSLKIESDF DATTLACIAF SCPNLEVLEI TTSGAAVNRI SGDELSRFVA NKRGLTSLKM EGCSNLGGFS LSSSSLSTLW LSDLHSLSKM IFNCPNLTEI
301: SLEFSRQEDD STDLVTMVDG LGRTCTRLQN IHIASLKLSH TVVLSLTAVN FRYLRMLSLV LGINITDASV AAISSGYKNL ELLDLSGSSI TDTGLGMICD
401: VLPDTLSKLL VALCPNITSS GIQFATAQLP LLELMDCGMT VSDPNSDNPT FVENPSPHKT PGYNQKMFIK HKRLKKLSLW GCSSLDALFL NCPELMDLNL
501: NLCSNLHPES LVLQCPKLQL VYASGCQGLL TGAIRKQVSE NFSAGENHMP RKRLADASKR IQALPSLYQE TREDGIYAGK RRKLEKEMCT IIH

Arabidopsis Description

FBL17F-box/LRR-repeat protein 17 [Source:UniProtKB/Swiss-Prot;Acc:Q8W104]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.