Factsheet for Os12t0601000-00

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os03t0137800-01
Os10t0471700-02

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54650.1	Os03t0137800-01	AT2G32710.1	18948957
AT3G54650.1	Os10t0471700-02	AT2G32710.1	18948957

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0633400-01	Rice	extracellular, vacuole	44.11	73.51
TraesCS5B01G058300.1	Wheat	plastid	76.96	72.19
TraesCS5A01G058400.2	Wheat	plastid	76.79	71.91
TraesCS5D01G069500.1	Wheat	plastid	76.43	71.81
Zm00001d030990_P001	Maize	cytosol	73.39	69.19
Zm00001d041414_P002	Maize	cytosol	70.89	66.17
OQU79521	Sorghum	plastid	70.89	64.24
HORVU5Hr1G014320.7	Barley	plastid	77.14	63.25
GSMUA_Achr4P28520_001	Banana	cytosol, mitochondrion	50.18	59.91
GSMUA_Achr4P21010_001	Banana	mitochondrion	51.61	59.1
GSMUA_Achr2P12640_001	Banana	plastid	58.04	57.83
VIT_07s0141g00330.t01	Wine grape	plastid	54.29	52.96
KRH67292	Soybean	cytosol	47.86	50.28
KRH71335	Soybean	nucleus	52.14	49.49
CDY64339	Canola	plastid	49.29	48.76
CDX73462	Canola	plastid	48.75	48.75
Os03t0633100-00	Rice	plastid	17.86	48.54
KRG95622	Soybean	nucleus, plastid	51.79	48.33
CDX78253	Canola	plastid	48.39	48.31
CDY55831	Canola	mitochondrion	42.68	48.19
KRH32101	Soybean	nucleus	50.89	48.14
PGSC0003DMT400051898	Potato	cytosol	50.0	47.46
PGSC0003DMT400049672	Potato	nucleus	50.18	47.23
Solyc06g084060.2.1	Tomato	cytosol, nucleus, plastid	49.82	47.21
Solyc09g065880.2.1	Tomato	nucleus	49.82	47.13
Bra007086.1-P	Field mustard	plastid	48.75	47.07
KRG90050	Soybean	cytosol	4.82	46.55
AT3G54650.1	Thale cress	plastid	48.93	46.21
Bra014802.1-P	Field mustard	plastid	48.93	34.99

Protein Annotations

Gene3D:1.20.1280.50	MapMan:19.2.2.8.1.4.6	Gene3D:3.80.10.10	UniProt:A0A0P0YBX4	ProteinID:BAT17956.1	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	InterPro:IPR032675
InterPro:LRR_dom_sf	EnsemblPlantsGene:Os12g0601000	EnsemblPlants:Os12t0601000-00	PFAM:PF00646	PANTHER:PTHR44840	PANTHER:PTHR44840:SF2
SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI0003939166	SEG:seg	:	:

Description

Os_F0685Similar to Leucine Rich Repeat family protein, expressed. (Os12t0601000-00)

Coordinates

chr12:+:25297910..25302130

Molecular Weight (calculated)

60764.8 Da

IEP (calculated)

8.460

GRAVY (calculated)

-0.028

Length

560 amino acids

Sequence
(BLAST)

001: MASSSDASSA LAAAAAVGKK RGSYNCGRCG LPKKGHVCAV AGEEQKPPRR ALHFDEAAPP PPPEKKVKVE VVEVDSSSSE EEEREARGWV EVGGGRRVPG
101: EVVVEVMRRL PPRGVAASAA VCRGWRGCAR RVWRAADELR LRAAGVRPVG ALLPRCPALS RLVLRMESDI DATMLACVAF SCPNLQYLEI SMVGSAANRM
201: TGDELTRFVS EKRSLSVLKL DGCSNLNFLN ISSSSLSTLW LSDLSSLSKS VINCPNLNEL SLGFTQQNND STDLISLMDS LGRTCSNLRN LHISSIHLCN
301: EAVFSLESAN LRGLCMLSLI LGSKITDAAV ASIVRSYASL DLLDLSGSSI TDNGLGMICK AFPHTLTRLL LALCPNITSC GVQVATSQLP LLQLMDCGKS
401: LCANSQPEAE RSYFGEIYGG IKFCSKLPIQ RKQQPNYQKL IIKHANLKKL SLWGCSALDA LYVNCPELSD LNLNCCTNLH PERLLLQCPS LKDVHASGCR
501: DMLIGAIRNQ VLNEFASAEP RVPCKRLADG SKRVQVPHFM LEQVKQKTFI SWKQITIAPI

Best Arabidopsis Sequence Match ( AT3G54650.1 )
(BLAST)

001: MQPQPHISPN TATAAISAAL ESQRSRKNRG SYNCGRCGQP KKGHVCLLTA PPDIPTTPIA SEPVSCISAA ASSSRSTVLS LTAAPSSRQT FTHLRRALSF
101: DDVDARNSLD ESDLDAASMD LDLQLDTDIV QPGRFHAVGL WEVLKRLPPS SLLMAARVCK GWRETSRKMW KAAEELRIRV PERAQIGYIG SLLQKCPRLI
201: RLSLKIESDF DATTLACIAF SCPNLEVLEI TTSGAAVNRI SGDELSRFVA NKRGLTSLKM EGCSNLGGFS LSSSSLSTLW LSDLHSLSKM IFNCPNLTEI
301: SLEFSRQEDD STDLVTMVDG LGRTCTRLQN IHIASLKLSH TVVLSLTAVN FRYLRMLSLV LGINITDASV AAISSGYKNL ELLDLSGSSI TDTGLGMICD
401: VLPDTLSKLL VALCPNITSS GIQFATAQLP LLELMDCGMT VSDPNSDNPT FVENPSPHKT PGYNQKMFIK HKRLKKLSLW GCSSLDALFL NCPELMDLNL
501: NLCSNLHPES LVLQCPKLQL VYASGCQGLL TGAIRKQVSE NFSAGENHMP RKRLADASKR IQALPSLYQE TREDGIYAGK RRKLEKEMCT IIH

Arabidopsis Description

FBL17F-box/LRR-repeat protein 17 [Source:UniProtKB/Swiss-Prot;Acc:Q8W104]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.