Factsheet for VIT_07s0141g00330.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 4
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_03s0063g00670.t01
VIT_05s0029g00040.t01
VIT_07s0031g00800.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54650.1	VIT_05s0029g00040.t01	AT2G32710.1	18948957
AT3G54650.1	VIT_03s0063g00670.t01	AT3G19150.1	18948957
AT3G54650.1	VIT_07s0031g00800.t01	AT3G19150.1	18948957

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH71335	Soybean	nucleus	66.72	64.92
PGSC0003DMT400051898	Potato	cytosol	66.38	64.58
KRH67292	Soybean	cytosol	59.93	64.54
Solyc06g084060.2.1	Tomato	cytosol, nucleus, plastid	66.2	64.3
Solyc09g065880.2.1	Tomato	nucleus	66.2	64.19
PGSC0003DMT400049672	Potato	nucleus	66.03	63.7
KRH32101	Soybean	nucleus	65.68	63.68
CDX73462	Canola	plastid	60.45	61.96
GSMUA_Achr4P28520_001	Banana	cytosol, mitochondrion	50.52	61.83
KRG95622	Soybean	nucleus, plastid	64.29	61.5
CDX78253	Canola	plastid	59.76	61.14
CDY55831	Canola	mitochondrion	52.44	60.69
Bra007086.1-P	Field mustard	plastid	61.15	60.52
GSMUA_Achr4P21010_001	Banana	mitochondrion	51.39	60.33
GSMUA_Achr2P12640_001	Banana	plastid	58.54	59.79
CDY64339	Canola	plastid	58.54	59.36
Os03t0633400-01	Rice	extracellular, vacuole	34.67	59.23
AT3G54650.1	Thale cress	plastid	61.15	59.19
Os12t0601000-00	Rice	plastid	52.96	54.29
TraesCS5B01G382000.4	Wheat	plastid	49.13	53.71
TraesCS5A01G378400.1	Wheat	plastid	52.79	53.53
TraesCS5D01G388400.1	Wheat	plastid	52.26	53.48
Zm00001d030990_P001	Maize	cytosol	53.48	51.68
EER93780	Sorghum	plastid	53.48	51.68
Zm00001d041414_P002	Maize	cytosol	52.96	50.67
Zm00001d033321_P001	Maize	plastid	50.52	50.26
TraesCS5B01G058300.1	Wheat	plastid	51.22	49.25
TraesCS5D01G069500.1	Wheat	plastid	51.05	49.16
TraesCS5A01G058400.2	Wheat	plastid	50.7	48.66
OQU79521	Sorghum	plastid	51.05	47.41
KRG90050	Soybean	cytosol	4.7	46.55
HORVU5Hr1G014320.7	Barley	plastid	51.39	43.19
Bra014802.1-P	Field mustard	plastid	58.54	42.91
HORVU5Hr1G093570.1	Barley	plastid	12.37	42.77
HORVU5Hr1G093590.1	Barley	extracellular	43.03	42.15
Os03t0633100-00	Rice	plastid	13.94	38.84

Protein Annotations

Gene3D:1.20.1280.50	EntrezGene:100254550	wikigene:100254550	MapMan:19.2.2.8.1.4.6	Gene3D:3.80.10.10	ProteinID:CBI17934
ProteinID:CBI17934.3	UniProt:D7SQK3	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	EMBL:FN594965	GO:GO:0000003
GO:GO:0001673	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0007049	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009555	GO:GO:0009790	GO:GO:0009791	GO:GO:0009793	GO:GO:0009987
GO:GO:0016043	GO:GO:0019005	GO:GO:0019538	GO:GO:0031146	GO:GO:0048316	GO:GO:0055047
InterPro:IPR001810	InterPro:IPR032675	EntrezGene:LOC100254550	wikigene:LOC100254550	InterPro:LRR_dom_sf	PFAM:PF12937
PANTHER:PTHR44840	PANTHER:PTHR44840:SF1	SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI00019837BA	ArrayExpress:VIT_07s0141g00330
EnsemblPlantsGene:VIT_07s0141g00330	EnsemblPlants:VIT_07s0141g00330.t01	unigene:Vvi.9707	RefSeq:XP_002275262	RefSeq:XP_002275262.1	SEG:seg

Description

No Description!

Coordinates

chr7:-:193329..199382

Molecular Weight (calculated)

62059.6 Da

IEP (calculated)

7.514

GRAVY (calculated)

-0.128

Length

574 amino acids

Sequence
(BLAST)

001: MQHRHVPHPP TGGGSSASAM AALADAKRGK KRGSYNCGRC GQPKKGHSCN LSGAATPTDS SASTADPSPR QQYTHLRRAL SFDDSDVRRS AGAEEEVVVE
101: DEEEAGSELG GGGLPASCLW EVMRRLPPAA MLAAAQVCKG WRETARRLWR SAEELRLRVP ARAQVGFVGS VLQKCPGLVR LSLRMESVVD ATMLACIAFS
201: CPNLEHMEIS TAVTAINRIT GDELGRFVAD KRCLKSLKME GCSNLGGFIL CSSSLSTLWL SDLHSLSKMA FNCPNLKEIS LDFSRHENDS TDLTTMVDGL
301: ARTCLRLQNI HIASVRLSHS VVLALAAANF RGLRMLSLLL GSEITDASVA AIASSYSNLE LLDLSGSSIS DSGIGMICNV FPETLSRLLL AVCPNISSSG
401: IQFATAQLPL LELMDCGMTI SDPNSQGPPS EENIDCESQQ VSNSKMHLIY QKLIIKHSRL KKLSLWGCSG LDALYLNCPE LNDLNLNSCT NLHPERLLLQ
501: CPNLESVHAS GCQDILVGAI ESQVNNGSAV ENQFPSKRLA DGSKRVRVPY FLSPQPSDFK MGRAQKRRCT LLMD

Best Arabidopsis Sequence Match ( AT3G54650.1 )
(BLAST)

001: MQPQPHISPN TATAAISAAL ESQRSRKNRG SYNCGRCGQP KKGHVCLLTA PPDIPTTPIA SEPVSCISAA ASSSRSTVLS LTAAPSSRQT FTHLRRALSF
101: DDVDARNSLD ESDLDAASMD LDLQLDTDIV QPGRFHAVGL WEVLKRLPPS SLLMAARVCK GWRETSRKMW KAAEELRIRV PERAQIGYIG SLLQKCPRLI
201: RLSLKIESDF DATTLACIAF SCPNLEVLEI TTSGAAVNRI SGDELSRFVA NKRGLTSLKM EGCSNLGGFS LSSSSLSTLW LSDLHSLSKM IFNCPNLTEI
301: SLEFSRQEDD STDLVTMVDG LGRTCTRLQN IHIASLKLSH TVVLSLTAVN FRYLRMLSLV LGINITDASV AAISSGYKNL ELLDLSGSSI TDTGLGMICD
401: VLPDTLSKLL VALCPNITSS GIQFATAQLP LLELMDCGMT VSDPNSDNPT FVENPSPHKT PGYNQKMFIK HKRLKKLSLW GCSSLDALFL NCPELMDLNL
501: NLCSNLHPES LVLQCPKLQL VYASGCQGLL TGAIRKQVSE NFSAGENHMP RKRLADASKR IQALPSLYQE TREDGIYAGK RRKLEKEMCT IIH

Arabidopsis Description

FBL17F-box/LRR-repeat protein 17 [Source:UniProtKB/Swiss-Prot;Acc:Q8W104]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.