Factsheet for TraesCS5D01G388400.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G151400.1
TraesCS1B01G168900.1
TraesCS1D01G148400.2
TraesCS4D01G332500.1
TraesCS5A01G240600.1
TraesCS5A01G506500.1
TraesCS5B01G238600.1
TraesCS5D01G247100.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54650.1	TraesCS1A01G151400.1	AT2G32710.1	18948957
AT3G54650.1	TraesCS1B01G168900.1	AT2G32710.1	18948957
AT3G54650.1	TraesCS1D01G148400.2	AT2G32710.1	18948957
AT3G54650.1	TraesCS4D01G332500.1	AT2G32710.1	18948957
AT3G54650.1	TraesCS5A01G506500.1	AT2G32710.1	18948957
AT3G54650.1	TraesCS5A01G240600.1	AT3G19150.1	18948957
AT3G54650.1	TraesCS5B01G238600.1	AT3G19150.1	18948957
AT3G54650.1	TraesCS5D01G247100.1	AT3G19150.1	18948957

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G378400.1	Wheat	plastid	98.57	97.7
TraesCS5B01G382000.4	Wheat	plastid	88.41	94.48
HORVU5Hr1G093570.1	Barley	plastid	24.42	82.53
Os03t0633400-01	Rice	extracellular, vacuole	49.38	82.44
HORVU5Hr1G093590.1	Barley	extracellular	77.36	74.06
EER93780	Sorghum	plastid	73.8	69.7
Zm00001d033321_P001	Maize	plastid	68.81	66.9
TraesCS5D01G069500.1	Wheat	plastid	64.35	60.57
GSMUA_Achr4P21010_001	Banana	mitochondrion	50.98	58.49
GSMUA_Achr4P28520_001	Banana	cytosol, mitochondrion	47.77	57.14
GSMUA_Achr2P12640_001	Banana	plastid	56.68	56.58
VIT_07s0141g00330.t01	Wine grape	plastid	53.48	52.26
Os03t0633100-00	Rice	plastid	19.07	51.94
KRH67292	Soybean	cytosol	47.77	50.28
KRG95622	Soybean	nucleus, plastid	52.05	48.67
KRH71335	Soybean	nucleus	50.98	48.47
CDY64339	Canola	plastid	48.48	48.06
CDX73462	Canola	plastid	47.77	47.86
Solyc09g065880.2.1	Tomato	nucleus	50.45	47.8
PGSC0003DMT400051898	Potato	cytosol	50.09	47.63
Solyc06g084060.2.1	Tomato	cytosol, nucleus, plastid	50.09	47.55
KRH32101	Soybean	nucleus	50.09	47.47
PGSC0003DMT400049672	Potato	nucleus	50.27	47.4
CDY55831	Canola	mitochondrion	41.53	46.98
CDX78253	Canola	plastid	46.88	46.88
Bra007086.1-P	Field mustard	plastid	47.59	46.03
AT3G54650.1	Thale cress	plastid	48.48	45.87
KRG90050	Soybean	cytosol	4.63	44.83
Bra014802.1-P	Field mustard	plastid	49.2	35.25

Protein Annotations

EnsemblPlants:TraesCS5D01G388400.1	EnsemblPlantsGene:TraesCS5D01G388400	Gene3D:1.20.1280.50	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:IPR032675	InterPro:LRR_dom_sf	PANTHER:PTHR44840	SEG:seg
SUPFAM:SSF52047	SUPFAM:SSF81383	MapMan:19.2.2.8.1.4.6	:	:	:

Description

No Description!

Coordinates

chr5D:-:457779340..457785948

Molecular Weight (calculated)

60457.7 Da

IEP (calculated)

8.119

GRAVY (calculated)

-0.033

Length

561 amino acids

Sequence
(BLAST)

001: MSSSSSLPAK PPPPPRPKTR GSYNCGRCGQ PKKGHVCNLP SPAAADGAAP PSPSPSSSGG DTRLRRALSF DEPSSPEKKP RPDHDGRTME LGGRAVPVDL
101: VVEVLRRLGP RGVLDAAAVS RAWRDCADRV WRVAEELRLR PAAAGLLGAL LPRCAALSRL VLHMESDVDA TMLSCLAFSC PSLETLEITM ADKAINNMTG
201: EELSRLVSEK HSLSILKIGG CSNLGFLNLS SSSLNVLWLS DLCSLSESVI SCPNMSELSL CFTQQSTECT DLVSLMDGLG RSCPNLRNLH ISSIQLSNEA
301: VSALEGANLR GLCMLSLILG SKMTDAAVAS IVRSCASLAL LDLSGSSISD SGVGMICKAF PHTLSRLLLA LCPNITTCGI QAATAQLPLL QLMDCGMSLR
401: SNLQNEKQGA YFGEINGRIR LCPKLPTLKK QPMRQKLIIK HDNLKKLSLW GCSAIDALYV KCPELIDLNL NTCTNLHPER LLLQCPNLKN VHAFGCQDML
501: IGAIKNQVLN EFAAAEPHLP CKRLADGSKR VQLSQFPQEQ LPEDKIWIGF KRSECIVHLD S

Best Arabidopsis Sequence Match ( AT3G54650.1 )
(BLAST)

001: MQPQPHISPN TATAAISAAL ESQRSRKNRG SYNCGRCGQP KKGHVCLLTA PPDIPTTPIA SEPVSCISAA ASSSRSTVLS LTAAPSSRQT FTHLRRALSF
101: DDVDARNSLD ESDLDAASMD LDLQLDTDIV QPGRFHAVGL WEVLKRLPPS SLLMAARVCK GWRETSRKMW KAAEELRIRV PERAQIGYIG SLLQKCPRLI
201: RLSLKIESDF DATTLACIAF SCPNLEVLEI TTSGAAVNRI SGDELSRFVA NKRGLTSLKM EGCSNLGGFS LSSSSLSTLW LSDLHSLSKM IFNCPNLTEI
301: SLEFSRQEDD STDLVTMVDG LGRTCTRLQN IHIASLKLSH TVVLSLTAVN FRYLRMLSLV LGINITDASV AAISSGYKNL ELLDLSGSSI TDTGLGMICD
401: VLPDTLSKLL VALCPNITSS GIQFATAQLP LLELMDCGMT VSDPNSDNPT FVENPSPHKT PGYNQKMFIK HKRLKKLSLW GCSSLDALFL NCPELMDLNL
501: NLCSNLHPES LVLQCPKLQL VYASGCQGLL TGAIRKQVSE NFSAGENHMP RKRLADASKR IQALPSLYQE TREDGIYAGK RRKLEKEMCT IIH

Arabidopsis Description

FBL17F-box/LRR-repeat protein 17 [Source:UniProtKB/Swiss-Prot;Acc:Q8W104]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.