Factsheet for PGSC0003DMT400051898

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400019919
PGSC0003DMT400040785
PGSC0003DMT400066394
PGSC0003DMT400076291

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54650.1	PGSC0003DMT400019919	AT2G32710.1	18948957
AT3G54650.1	PGSC0003DMT400076291	AT2G32710.1	18948957
AT3G54650.1	PGSC0003DMT400040785	AT3G19150.1	18948957
AT3G54650.1	PGSC0003DMT400066394	AT3G19150.1	18948957

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g084060.2.1	Tomato	cytosol, nucleus, plastid	94.92	94.75
PGSC0003DMT400049672	Potato	nucleus	72.88	72.27
VIT_07s0141g00330.t01	Wine grape	plastid	64.58	66.38
KRH67292	Soybean	cytosol	54.58	60.41
CDX73462	Canola	plastid	57.29	60.36
KRH71335	Soybean	nucleus	59.66	59.66
CDX78253	Canola	plastid	56.44	59.36
KRG95622	Soybean	nucleus, plastid	60.17	59.17
KRH32101	Soybean	nucleus	59.32	59.12
GSMUA_Achr4P21010_001	Banana	mitochondrion	48.81	58.9
Bra007086.1-P	Field mustard	plastid	57.29	58.28
GSMUA_Achr2P12640_001	Banana	plastid	55.42	58.19
GSMUA_Achr4P28520_001	Banana	cytosol, mitochondrion	46.1	58.0
Os03t0633400-01	Rice	extracellular, vacuole	32.71	57.44
CDY64339	Canola	plastid	53.9	56.18
CDY55831	Canola	mitochondrion	47.12	56.05
AT3G54650.1	Thale cress	plastid	55.42	55.14
TraesCS5B01G382000.4	Wheat	plastid	44.75	50.29
TraesCS5A01G378400.1	Wheat	plastid	48.14	50.18
TraesCS5D01G388400.1	Wheat	plastid	47.63	50.09
Os12t0601000-00	Rice	plastid	47.46	50.0
Zm00001d030990_P001	Maize	cytosol	49.66	49.33
EER93780	Sorghum	plastid	48.47	48.15
Zm00001d041414_P002	Maize	cytosol	47.8	47.0
TraesCS5A01G058400.2	Wheat	plastid	47.46	46.82
TraesCS5D01G069500.1	Wheat	plastid	47.29	46.81
TraesCS5B01G058300.1	Wheat	plastid	47.29	46.73
KRG90050	Soybean	cytosol	4.58	46.55
Zm00001d033321_P001	Maize	plastid	44.92	45.93
OQU79521	Sorghum	plastid	47.12	44.98
HORVU5Hr1G014320.7	Barley	plastid	48.31	41.73
HORVU5Hr1G093590.1	Barley	extracellular	40.51	40.78
Bra014802.1-P	Field mustard	plastid	54.07	40.74
HORVU5Hr1G093570.1	Barley	plastid	10.34	36.75
Os03t0633100-00	Rice	plastid	10.51	30.1

Protein Annotations

Gene3D:1.20.1280.50	EntrezGene:102590325	MapMan:19.2.2.8.1.4.6	Gene3D:3.80.10.10	InterPro:F-box-like_dom_sf	InterPro:F-box_dom
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf
UniProt:M1BSE8	PFAM:PF00646	EnsemblPlantsGene:PGSC0003DMG400020140	PGSC:PGSC0003DMG400020140	EnsemblPlants:PGSC0003DMT400051898	PFscan:PS50181
PANTHER:PTHR44840	PANTHER:PTHR44840:SF1	SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI0002968268	RefSeq:XP_006352754.1
SEG:seg	:	:	:	:	:

Description

F-box/leucine rich repeat protein [Source:PGSC_GENE;Acc:PGSC0003DMG400020140]

Coordinates

chr6:+:58881091..58885812

Molecular Weight (calculated)

64335.9 Da

IEP (calculated)

7.303

GRAVY (calculated)

-0.137

Length

590 amino acids

Sequence
(BLAST)

001: MQGRHPHPYT TTPISEVILP KRGKKRGSYS CGRCGVPKKG HVCNFPKNLN PIDNPSPNPD SSLLASPPPV VRPQPPPPMP QRHVLPQLRR ALSFDDVDVN
101: DSPGSDDDGE FSDLDNESDL VGSGSGIGTL PSSCLWEVFK RLPPPALLSS ARVCKGWSET SRRIWKSAVE LRLRVPVNAQ IGLVGSVLKK CPGLVKLSLR
201: LESDIDATML ACIAFSCPKL DSMEILMCNS VNRITGDELG RFVAEKRCLT NLKMEGCSNL EGFTLCSTSL STLSLSDLYC HAKMVFNCPN LKDVSLDFSH
301: QENDTTDLTL MVDGLGRSCP RLQNIHIASI RLTHAVVLAL TAANLRGLRM LSLVLGSEIT DASVAAIASS YSSLELLDLS GSSISDSGIG MICNIFPETL
401: SKLLLALCPN ITSSGIQFAA AQLPNLELMD CGMTISDPDL DNPTTQENND LQLQRTPNSK QHLIYQKLII KHTCLKKLSL WGCSGLDALY LNCPELNDLN
501: LNSCTNLNPE RLLLQCPNLE CVHALGCQDA LVGTLKNQVC TDFMAVEDHS HCKRLPDGSK RIKVPDLFSP QPTDKKNKRI SKRCCTVLVN

Best Arabidopsis Sequence Match ( AT3G54650.1 )
(BLAST)

001: MQPQPHISPN TATAAISAAL ESQRSRKNRG SYNCGRCGQP KKGHVCLLTA PPDIPTTPIA SEPVSCISAA ASSSRSTVLS LTAAPSSRQT FTHLRRALSF
101: DDVDARNSLD ESDLDAASMD LDLQLDTDIV QPGRFHAVGL WEVLKRLPPS SLLMAARVCK GWRETSRKMW KAAEELRIRV PERAQIGYIG SLLQKCPRLI
201: RLSLKIESDF DATTLACIAF SCPNLEVLEI TTSGAAVNRI SGDELSRFVA NKRGLTSLKM EGCSNLGGFS LSSSSLSTLW LSDLHSLSKM IFNCPNLTEI
301: SLEFSRQEDD STDLVTMVDG LGRTCTRLQN IHIASLKLSH TVVLSLTAVN FRYLRMLSLV LGINITDASV AAISSGYKNL ELLDLSGSSI TDTGLGMICD
401: VLPDTLSKLL VALCPNITSS GIQFATAQLP LLELMDCGMT VSDPNSDNPT FVENPSPHKT PGYNQKMFIK HKRLKKLSLW GCSSLDALFL NCPELMDLNL
501: NLCSNLHPES LVLQCPKLQL VYASGCQGLL TGAIRKQVSE NFSAGENHMP RKRLADASKR IQALPSLYQE TREDGIYAGK RRKLEKEMCT IIH

Arabidopsis Description

FBL17F-box/LRR-repeat protein 17 [Source:UniProtKB/Swiss-Prot;Acc:Q8W104]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.