Factsheet for PGSC0003DMT400076291

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400006576	nucleus
PGSC0003DMT400011661
PGSC0003DMT400021687
PGSC0003DMT400030176	nucleus
PGSC0003DMT400030222	nucleus
PGSC0003DMT400036934
PGSC0003DMT400037827	nucleus
PGSC0003DMT400039033	nucleus
PGSC0003DMT400040287	endoplasmic reticulum
PGSC0003DMT400041637	nucleus
PGSC0003DMT400047304
PGSC0003DMT400049672
PGSC0003DMT400051898
PGSC0003DMT400053010
PGSC0003DMT400055428	nucleus
PGSC0003DMT400055712
PGSC0003DMT400066557	nucleus
PGSC0003DMT400077428
PGSC0003DMT400078301

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G32710.1	PGSC0003DMT400011661	AT1G10840.1	20706207
AT2G32710.1	PGSC0003DMT400055712	AT1G10840.1	20706207
AT2G32710.1	PGSC0003DMT400040287	AT1G70210.1	20407024
AT2G32710.1	PGSC0003DMT400021687	AT1G71380.1	20706207
AT2G32710.1	PGSC0003DMT400006576	AT1G80370.1	20407024
AT2G32710.1	PGSC0003DMT400077428	AT3G48750.1	11449057
AT2G32710.1	PGSC0003DMT400077428	AT3G48750.1	20706207
AT2G32710.1	PGSC0003DMT400049672	AT3G54650.1	18948957
AT2G32710.1	PGSC0003DMT400051898	AT3G54650.1	18948957
AT2G32710.1	PGSC0003DMT400039033	AT4G03270.1	20407024
AT2G32710.1	PGSC0003DMT400047304	AT4G28230.1	20706207
AT2G32710.1	PGSC0003DMT400066557	AT4G34160.1	20407024
AT2G32710.1	PGSC0003DMT400036934	AT5G07310.1	20706207
AT2G32710.1	PGSC0003DMT400037827	AT5G10440.1	20407024
AT2G32710.1	PGSC0003DMT400041637	AT5G10440.1	20407024
AT2G32710.1	PGSC0003DMT400030176	AT5G43080.1	20407024
AT2G32710.1	PGSC0003DMT400030222	AT5G43080.1	20407024
AT2G32710.1	PGSC0003DMT400055428	AT5G43080.1	20407024
AT2G32710.1	PGSC0003DMT400053010	AT5G58290.1	20706207
AT2G32710.1	PGSC0003DMT400078301	AT5G58290.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g091780.2.1	Tomato	nucleus	93.3	92.86
PGSC0003DMT400019919	Potato	nucleus	55.02	49.15
GSMUA_Achr8P12510_001	Banana	cytosol, mitochondrion, nucleus, plastid	42.58	46.35
GSMUA_Achr11P...	Banana	nucleus	43.54	45.5
PGSC0003DMT400045507	Potato	nucleus	43.06	45.45
GSMUA_Achr5P20430_001	Banana	nucleus	41.15	45.26
Zm00001d014046_P001	Maize	nucleus	41.15	44.79
HORVU3Hr1G064490.1	Barley	nucleus	15.31	44.44
TraesCS1A01G151400.1	Wheat	nucleus	42.58	43.84
Os10t0471700-02	Rice	nucleus	40.67	43.81
EER91497	Sorghum	cytosol	39.71	43.46
GSMUA_Achr1P00900_001	Banana	nucleus	39.23	43.39
TraesCS1B01G168900.1	Wheat	cytosol, nucleus, plastid	42.11	43.35
TraesCS1D01G148400.2	Wheat	cytosol, nucleus, plastid	42.11	43.35
KRG92238	Soybean	nucleus	46.41	43.3
CDY59640	Canola	nucleus	25.36	42.06
GSMUA_Achr11P...	Banana	nucleus	37.32	41.49
GSMUA_Achr2P11790_001	Banana	nucleus	39.71	40.89
GSMUA_Achr5P12920_001	Banana	nucleus	42.58	40.27
CDY23793	Canola	nucleus	45.93	39.34
CDX84726	Canola	nucleus	46.41	39.27
CDX79470	Canola	nucleus	46.41	39.11
GSMUA_Achr1P20410_001	Banana	nucleus	42.58	38.86
Bra022897.1-P	Field mustard	nucleus	46.41	38.8
HORVU5Hr1G031690.1	Barley	extracellular	20.1	38.18
Zm00001d048363_P001	Maize	nucleus	39.23	38.14
GSMUA_Achr4P26490_001	Banana	nucleus	39.71	38.07
EER95545	Sorghum	nucleus	38.76	38.03
Bra021808.1-P	Field mustard	nucleus	43.54	37.92
CDY19160	Canola	nucleus	43.06	37.04
TraesCS5A01G506500.1	Wheat	nucleus	36.84	36.84
CDY12181	Canola	nucleus	42.11	36.82
VIT_05s0029g00040.t01	Wine grape	nucleus	45.45	36.68
Bra005565.1-P	Field mustard	nucleus	39.23	36.28
Zm00001d027585_P001	Maize	nucleus	36.84	36.15
Os03t0137800-01	Rice	mitochondrion, nucleus, plastid	37.8	35.75
HORVU3Hr1G064580.1	Barley	nucleus	21.53	34.35
GSMUA_Achr6P36640_001	Banana	nucleus	39.71	33.74
AT2G32710.1	Thale cress	nucleus	46.41	33.56
TraesCS4D01G332500.1	Wheat	nucleus	33.97	32.42
HORVU1Hr1G040110.3	Barley	nucleus, plastid	30.14	31.82
Zm00001d032732_P002	Maize	mitochondrion	26.32	28.35
GSMUA_Achr5P21770_001	Banana	nucleus	38.76	27.74
HORVU4Hr1G080410.1	Barley	nucleus	35.89	20.11

Protein Annotations

EntrezGene:102586876	MapMan:13.1.1.3.1	Gene3D:4.10.365.10	InterPro:CDI	GO:GO:0003674	GO:GO:0004860
GO:GO:0004861	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464
GO:GO:0006469	GO:GO:0007049	GO:GO:0007050	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0019538	GO:GO:0030234	GO:GO:0071901	UniProt:M1CWI0	PFAM:PF02234	EnsemblPlantsGene:PGSC0003DMG400029660
PGSC:PGSC0003DMG400029660	EnsemblPlants:PGSC0003DMT400076291	PIRSF:PIRSF017811	PANTHER:PTHR10265	PANTHER:PTHR10265:SF30	UniParc:UPI0002952160
RefSeq:XP_006360356.1	SEG:seg	:	:	:	:

Description

Cyclin dependent kinase inhibitor [Source:PGSC_GENE;Acc:PGSC0003DMG400029660]

Coordinates

chr9:-:58686109..58689270

Molecular Weight (calculated)

23644.0 Da

IEP (calculated)

9.817

GRAVY (calculated)

-1.033

Length

209 amino acids

Sequence
(BLAST)

001: MGKYIRKARK TEDVSPLGVL TRAKALALNG GDGGSYLELR SRRLVKPFAV LEGRRQKNGV PKNPNLVNPN PNQIPNVCVN SEEGKGVKEM ENQKEKEKSC
101: LGPEDSFGEK LLEFEGRKRT TRESTPCSLI RDSDNIQTPG SSTRRTNANE ANGRVPNSIQ PTIPTDLEMD EFFTRAEKEQ QRKFIEKYNF DPVNDKPLPG
201: RYEWVKVNH

Best Arabidopsis Sequence Match ( AT5G48820.1 )
(BLAST)

001: MGKYMKKSKI TGDISVMEVS KATAPSPGVR TRAAKTLALK RLNSSAADSA LPNDSSCYLQ LRSRRLEKPS SLIEPKQPPR VHRSGIKESG SRSRVDSVNS
101: VPVAQSSNED ECFDNFVSVQ VSCGENSLGF ESRHSTREST PCNFVEDMEI MVTPGSSTRS MCRATKEYTR EQDNVIPTTS EMEEFFAYAE QQQQRLFMEK
201: YNFDIVNDIP LSGRYEWVQV KP

Arabidopsis Description

KRP3Inhibitor/interactor with cyclin-dependent kinase [Source:UniProtKB/TrEMBL;Acc:F4K388]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.