Factsheet for PGSC0003DMT400021687

Subcellular Localization

min:

: max

Winner_takes_all: vacuole

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 7
plasma membrane 5
golgi 5
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	vacuole
Any Predictor:	nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g040340.1.1	Tomato	extracellular, vacuole	97.1	97.7
KRH56424	Soybean	extracellular, vacuole	71.58	71.28
KRH62487	Soybean	extracellular, vacuole	70.75	70.45
VIT_18s0089g00210.t01	Wine grape	extracellular, vacuole	72.2	70.45
CDY12503	Canola	extracellular, vacuole	68.88	68.74
CDY25758	Canola	extracellular, vacuole	68.67	68.53
Bra012349.1-P	Field mustard	extracellular, plastid, vacuole	68.46	68.32
AT1G22880.1	Thale cress	extracellular	68.46	68.18
AT1G71380.1	Thale cress	extracellular	67.43	67.15
CDX96319	Canola	extracellular, plastid, vacuole	67.43	67.15
CDY66787	Canola	extracellular, plastid, vacuole	67.22	66.94
Bra016143.1-P	Field mustard	extracellular, plastid, vacuole	67.01	66.74
Bra007982.1-P	Field mustard	extracellular	65.56	65.29
CDY03687	Canola	extracellular	65.56	65.29
CDY03686	Canola	extracellular	64.52	64.39
CDY37939	Canola	extracellular, vacuole	64.32	64.18
Bra007983.1-P	Field mustard	extracellular	64.11	63.98
CDY37936	Canola	extracellular	59.75	63.16
GSMUA_Achr6P07430_001	Banana	extracellular, vacuole	57.05	59.52
TraesCS6D01G089200.1	Wheat	golgi	52.28	58.33
Os04t0443300-00	Rice	vacuole	59.96	57.8
HORVU2Hr1G077130.1	Barley	extracellular, vacuole	59.75	57.72
TraesCS2D01G308500.1	Wheat	golgi	59.13	57.23
TraesCS6A01G093200.1	Wheat	golgi	58.51	56.74
TraesCS2B01G327200.1	Wheat	nucleus	59.75	56.69
TraesCS2A01G310200.1	Wheat	vacuole	58.71	56.04
Zm00001d025475_P001	Maize	extracellular, vacuole	58.92	55.8
PGSC0003DMT400031897	Potato	endoplasmic reticulum, extracellular	57.47	55.62
TraesCS6B01G122000.1	Wheat	vacuole	47.3	55.61
EES12225	Sorghum	plastid	58.3	54.56
PGSC0003DMT400081314	Potato	extracellular	55.19	53.2
PGSC0003DMT400023082	Potato	extracellular, vacuole	53.53	52.76
PGSC0003DMT400008105	Potato	endoplasmic reticulum, extracellular, vacuole	52.9	51.52
PGSC0003DMT400072087	Potato	golgi, vacuole	43.98	49.3
PGSC0003DMT400031762	Potato	extracellular	49.17	47.21
PGSC0003DMT400069884	Potato	extracellular, vacuole	45.02	45.3
PGSC0003DMT400052749	Potato	extracellular, vacuole	44.19	43.83
PGSC0003DMT400001781	Potato	extracellular, vacuole	44.61	42.74
PGSC0003DMT400057164	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	34.85	39.62
PGSC0003DMT400032028	Potato	endoplasmic reticulum, extracellular, vacuole	47.93	36.96
PGSC0003DMT400051238	Potato	extracellular	45.44	34.65
PGSC0003DMT400012809	Potato	extracellular, vacuole	37.14	33.15

Protein Annotations

KEGG:00500+3.2.1.4	Gene3D:1.50.10.10	EntrezGene:102583923	MapMan:21.1.3.1	InterPro:6-hairpin_glycosidase_sf	InterPro:6hp_glycosidase-like_sf
GO:GO:0000272	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0008810	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0016798
GO:GO:0030245	InterPro:Glyco_hydro_9	InterPro:Glyco_hydro_9_Asp/Glu_AS	InterPro:Glyco_hydro_9_His_AS	InterPro:IPR012341	UniProt:M1AFJ4
PFAM:PF00759	EnsemblPlantsGene:PGSC0003DMG400008413	PGSC:PGSC0003DMG400008413	EnsemblPlants:PGSC0003DMT400021687	ScanProsite:PS00592	ScanProsite:PS00698
PANTHER:PTHR22298	PANTHER:PTHR22298:SF54	SUPFAM:SSF48208	SignalP:SignalP-noTM	UniParc:UPI000296C857	RefSeq:XP_006343479.1
SEG:seg	:	:	:	:	:

Description

Endo-1,4-beta-D-glucanase [Source:PGSC_GENE;Acc:PGSC0003DMG400008413]

Coordinates

chr11:-:17868693..17872105

Molecular Weight (calculated)

53859.8 Da

IEP (calculated)

8.858

GRAVY (calculated)

-0.302

Length

482 amino acids

Sequence
(BLAST)

001: MYRMKVCVCL ILFFSLGTAQ LDYRDALEKS ILFFEGQRSG KLPPNQRLSW RGNSGLQDGS LAKVDLSGGY YDAGDNVKFN FPMAYTTTML SWNTLEYGKR
101: MGAQLQHARA AIRWATDYFL KCANAAPNKL FVGVGDPNAD HKCWERPEDM DTVRSVYYVS PSNPGSDVAG EMAAALAAAS LVFRSVDPVY SKKLLGNAVK
201: VFRFAVQYRG SYSDSLGSAA CPFYCSYSGY KDELYWGAAW LLRATNDISY LNLINTLGAN DVPDLFSWDN KYAGAHVLMS RRSVVGNDNR FDSFKQHAED
301: FVCKVLPNSP YTSTQYTKGG LIYKLPEENL QYVTSITSLL TTYAKYMATK KYTFNCGSLL VTEKTVRSVA KRQVDYILGN NPMKMSYMVG YGRNYPRRIH
401: HRGSSLPSLA MHPQSFGCEA GFQPFYYTAN PNPNILVGAI IGGPNQNDFF PDERTDYSHS EPATYINAAI VGPLAYFDSS KR

Best Arabidopsis Sequence Match ( AT1G22880.1 )
(BLAST)

001: MASPFFFVFL LSALSLENTY ASPNYREALS KSLLFFQGQR SGRLPSDQQL SWRSSSGLSD GSSAHVDLTG GYYDAGDNVK FNFPMAFTTT MLSWSSLEYG
101: KKMGPELQNS RVAIRWATDY LLKCARATPG KLYVGVGDPN GDHKCWERPE DMDTPRTVYS VSPSNPGSDV AAETAAALAA SSMVFRKVDP KYSRLLLATA
201: KKVMQFAIQY RGAYSNSLSS SVCPFYCSYS GYKDELLWGA AWLHRATNDP YYTNFIKSLG GGDQPDIFSW DNKYAGAYVL LSRRAVLNKD NNFELYKQAA
301: ENFMCKILPN SPSSSTKYTK GGLMYKLPQS NLQYVTSITF LLTTYAKYMK STKQTFNCGN SLIVPNALIN LSKRQVDYVL GVNPMKMSYM VGFSSNFPKR
401: IHHRGSSLPS RAVRSNSLGC NGGFQSFRTQ NPNPNILTGA IVGGPNQNDE YPDQRDDYTR SEPATYINAA FVGPLAYFAA SRSP

Arabidopsis Description

CEL5Endoglucanase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q2V4L8]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.