Factsheet for PGSC0003DMT400081314

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 6
plasma membrane 6
golgi 5
nucleus 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	extracellular, plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

extracellular: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g075360.2.1	Tomato	plastid	99.4	97.45
KRH68213	Soybean	nucleus	78.0	78.0
KRH69273	Soybean	extracellular, vacuole	79.0	77.91
VIT_07s0005g00740.t01	Wine grape	plastid	79.6	77.89
KRG96467	Soybean	extracellular, vacuole	64.8	77.88
KRH31855	Soybean	nucleus	78.6	77.82
GSMUA_Achr11P...	Banana	extracellular, vacuole	75.6	74.7
CDX97262	Canola	vacuole	76.4	74.32
Bra018559.1-P	Field mustard	extracellular, vacuole	76.2	74.12
CDY22043	Canola	extracellular, vacuole	76.6	73.94
Bra036281.1-P	Field mustard	extracellular, vacuole	76.4	73.75
CDY52780	Canola	extracellular, vacuole	76.2	73.55
AT4G02290.1	Thale cress	plastid	75.6	73.26
AT1G02800.1	Thale cress	extracellular, vacuole	72.2	72.06
CDY32480	Canola	extracellular, vacuole	71.8	70.12
TraesCS1B01G377100.1	Wheat	extracellular, vacuole	69.2	69.62
CDY37459	Canola	endoplasmic reticulum, extracellular	70.8	69.41
Os01t0312800-01	Rice	extracellular	69.2	69.34
Bra032584.1-P	Field mustard	extracellular, vacuole	71.6	69.25
CDY01915	Canola	cytosol	50.2	69.15
TraesCS1D01G365100.1	Wheat	extracellular, vacuole	68.6	68.88
EES00659	Sorghum	vacuole	68.6	68.46
Zm00001d009097_P001	Maize	extracellular	69.2	66.54
HORVU1Hr1G079980.3	Barley	extracellular, vacuole	68.8	65.65
TraesCS1A01G360700.3	Wheat	extracellular, vacuole	68.8	65.28
PGSC0003DMT400031897	Potato	endoplasmic reticulum, extracellular	62.4	62.65
PGSC0003DMT400023082	Potato	extracellular, vacuole	56.6	57.87
PGSC0003DMT400021687	Potato	vacuole	53.2	55.19
PGSC0003DMT400008105	Potato	endoplasmic reticulum, extracellular, vacuole	53.2	53.74
PGSC0003DMT400072087	Potato	golgi, vacuole	42.8	49.77
PGSC0003DMT400069884	Potato	extracellular, vacuole	46.6	48.64
PGSC0003DMT400031762	Potato	extracellular	48.8	48.61
PGSC0003DMT400001781	Potato	extracellular, vacuole	47.2	46.92
PGSC0003DMT400052749	Potato	extracellular, vacuole	44.6	45.88
PGSC0003DMT400057164	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	37.0	43.63
PGSC0003DMT400032028	Potato	endoplasmic reticulum, extracellular, vacuole	49.4	39.52
PGSC0003DMT400012809	Potato	extracellular, vacuole	41.8	38.7
PGSC0003DMT400051238	Potato	extracellular	43.2	34.18

Protein Annotations

KEGG:00500+3.2.1.4	Gene3D:1.50.10.10	MapMan:35.1	InterPro:6-hairpin_glycosidase_sf	InterPro:6hp_glycosidase-like_sf	GO:GO:0000272
GO:GO:0003674	GO:GO:0003824	GO:GO:0004553	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152
GO:GO:0008810	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0016798	GO:GO:0030245
InterPro:Glyco_hydro_9	InterPro:Glyco_hydro_9_Asp/Glu_AS	InterPro:Glyco_hydro_9_His_AS	InterPro:IPR012341	UniProt:M1D4K0	PFAM:PF00759
EnsemblPlantsGene:PGSC0003DMG400031792	PGSC:PGSC0003DMG400031792	EnsemblPlants:PGSC0003DMT400081314	ScanProsite:PS00592	ScanProsite:PS00698	PANTHER:PTHR22298
PANTHER:PTHR22298:SF55	SUPFAM:SSF48208	SignalP:SignalP-noTM	UniParc:UPI0002957BD0	SEG:seg	:

Description

Endo-1,4-beta-glucanase [Source:PGSC_GENE;Acc:PGSC0003DMG400031792]

Coordinates

chr9:+:52874164..52877529

Molecular Weight (calculated)

55405.2 Da

IEP (calculated)

9.331

GRAVY (calculated)

-0.250

Length

500 amino acids

Sequence
(BLAST)

001: MAMAITIFLF LLSFVTPVFL AKPTHHAHHP RFASHNYRDA LAKSILYFEG QRSGKLPSSQ RITWRKDSGL SDGKAMGVDL VGGYYDAGDN VKFGFPMAFT
101: TTMLSWSVIE FGGLMKGELL NAKQAIGWAT EYLLKATAHP DTIYVQVGDA GSDHSCWERP EDMDTPRSVY KIDKNTPGTE VAAETAAALA AASLVFRKCN
201: PSYSKILIKR AIRVFAFADK YRGSYSNGLR KVVCPYYCSV SGYEDELLWG AAWLHRATKN PTYLNYIQRN GQTLGAAETD NTFGWDNKHV GARILLSKSF
301: LVQKLQTLHD YKSHADNYIC SLIPGTPASQ AQYTPGGLLF KMDDSNMQYV TSTSFLLVTY AKYLTSARMV VKCGGVVITP KRLRNVAKKQ VDYLLGDNPL
401: KMSYMVGYGA RYPQRIHHRG SSLPSVANHP AKIQCRDGFS VMKSQSPNPN VLVGAVVGGP DEHDRFPDER SDYEQSEPAT YINAPLVGTL TYLAHSFGQL

Best Arabidopsis Sequence Match ( AT4G02290.1 )
(BLAST)

001: MALLLVSSSS SYALRVTIFL SFFFFLCNGF SYPTTSSLFN THHHRHHLAK HNYKDALTKS ILFFEGQRSG KLPSNQRMSW RRDSGLSDGS ALHVDLVGGY
101: YDAGDNIKFG FPMAFTTTML SWSVIEFGGL MKSELQNAKI AIRWATDYLL KATSQPDTIY VQVGDANKDH SCWERPEDMD TVRSVFKVDK NIPGSDVAAE
201: TAAALAAAAI VFRKSDPSYS KVLLKRAISV FAFADKYRGT YSAGLKPDVC PFYCSYSGYQ DELLWGAAWL QKATKNIKYL NYIKINGQIL GAAEYDNTFG
301: WDNKHAGARI LLTKAFLVQN VKTLHEYKGH ADNFICSVIP GAPFSSTQYT PGGLLFKMAD ANMQYVTSTS FLLLTYAKYL TSAKTVVHCG GSVYTPGRLR
401: SIAKRQVDYL LGDNPLRMSY MVGYGPKFPR RIHHRGSSLP CVASHPAKIQ CHQGFAIMNS QSPNPNFLVG AVVGGPDQHD RFPDERSDYE QSEPATYINS
501: PLVGALAYFA HAYGQL

Arabidopsis Description

AtGH9B13Endoglucanase 17 [Source:UniProtKB/Swiss-Prot;Acc:O81416]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.