Factsheet for PGSC0003DMT400031762

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 2
extracellular 7
endoplasmic reticulum 4
vacuole 5
plasma membrane 5
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	extracellular, plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400037344
PGSC0003DMT400057390

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G23560.1	PGSC0003DMT400037344	AT4G26630.1	25387881
AT4G23560.1	PGSC0003DMT400057390	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g081620.2.1	Tomato	extracellular	95.22	95.41
VIT_02s0025g00430.t01	Wine grape	extracellular, vacuole	70.12	69.98
Bra013709.1-P	Field mustard	extracellular	65.14	68.12
CDY44116	Canola	extracellular	65.14	68.12
CDY10895	Canola	extracellular	64.74	67.71
CDX94202	Canola	vacuole	63.55	66.46
AT4G09740.1	Thale cress	extracellular	63.15	66.32
Bra019296.1-P	Field mustard	extracellular, vacuole	63.35	66.25
CDY10945	Canola	extracellular, vacuole	63.35	66.25
AT4G23560.1	Thale cress	extracellular	62.95	65.97
KRH27886	Soybean	extracellular	66.33	65.17
Zm00001d032271_P001	Maize	extracellular	57.37	56.36
TraesCS1D01G090100.1	Wheat	extracellular	55.98	55.86
Os08t0387400-01	Rice	extracellular	57.37	55.81
TraesCS1A01G088700.1	Wheat	extracellular	56.18	55.73
EES13778	Sorghum	extracellular	57.37	55.71
TraesCS1B01G107700.1	Wheat	extracellular	55.78	55.34
HORVU1Hr1G019520.1	Barley	golgi, mitochondrion, vacuole	56.37	53.1
PGSC0003DMT400031897	Potato	endoplasmic reticulum, extracellular	50.4	50.8
PGSC0003DMT400021687	Potato	vacuole	47.21	49.17
PGSC0003DMT400081314	Potato	extracellular	48.61	48.8
PGSC0003DMT400023082	Potato	extracellular, vacuole	47.21	48.47
PGSC0003DMT400069884	Potato	extracellular, vacuole	45.22	47.39
PGSC0003DMT400008105	Potato	endoplasmic reticulum, extracellular, vacuole	46.22	46.87
PGSC0003DMT400052749	Potato	extracellular, vacuole	44.42	45.88
PGSC0003DMT400001781	Potato	extracellular, vacuole	44.42	44.33
PGSC0003DMT400072087	Potato	golgi, vacuole	37.65	43.95
PGSC0003DMT400057164	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	34.86	41.27
PGSC0003DMT400051238	Potato	extracellular	45.22	35.92
PGSC0003DMT400032028	Potato	endoplasmic reticulum, extracellular, vacuole	44.62	35.84
PGSC0003DMT400012809	Potato	extracellular, vacuole	37.25	34.63

Protein Annotations

KEGG:00500+3.2.1.4	Gene3D:1.50.10.10	MapMan:35.1	InterPro:6-hairpin_glycosidase_sf	InterPro:6hp_glycosidase-like_sf	GO:GO:0000272
GO:GO:0003674	GO:GO:0003824	GO:GO:0004553	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152
GO:GO:0008810	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0016798	GO:GO:0030245
InterPro:Glyco_hydro_9	InterPro:Glyco_hydro_9_Asp/Glu_AS	InterPro:Glyco_hydro_9_His_AS	InterPro:IPR012341	UniProt:M1AW68	PFAM:PF00759
EnsemblPlantsGene:PGSC0003DMG400012183	PGSC:PGSC0003DMG400012183	EnsemblPlants:PGSC0003DMT400031762	ScanProsite:PS00592	ScanProsite:PS00698	PANTHER:PTHR22298
PANTHER:PTHR22298:SF22	SUPFAM:SSF48208	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI0002963285	SEG:seg

Description

Endo-1,4-beta-glucanase [Source:PGSC_GENE;Acc:PGSC0003DMG400012183]

Coordinates

chr8:-:55277792..55281642

Molecular Weight (calculated)

55301.0 Da

IEP (calculated)

8.116

GRAVY (calculated)

-0.287

Length

502 amino acids

Sequence
(BLAST)

001: MSCSKNIWVV IFFLCILAGP IIAQDYKDSL GKAILFFEGQ RSGKLPVSQR VKWRGDSALV DGKIERVNLI GGYYDAGDNV KFGWPMAYSL TLLSWAAIEH
101: QTQISSTNQQ VHLQNAIRWG TNFLILAHTS STTLYTQVGD GNADHQCWER PEDMDTPRTL YKITSNSPGS EVAADVAAAF AAASIVFKNI DSNYSTKLLK
201: RSKSLFAFAD KYRGSYQASC PFYCSYSGYK DELLWAAAWL YKAGGGNNYL NYASNNQGWS QVASEFSWDN KFAGAQTLLA KEYLNGKSNL EKFKKDADSF
301: ICGLMPESSS IQIKTTPGGL LYYRDSSNLQ YVTGATMVLF MYTKVLEAAG IGGVTCGSVN FSTSKIKAFA KLQVDYILGN NPLKMSYMVG FGNKYPTQLH
401: HRASSLPSIY NHPTMVGCND GYSSWYNSNN PNPNTHVGAI VGGPNSGDQF VDSRSDYSHS EPTTYMNAAF VGSVAPLIGQ NKEGEHYGEI NSQFNKTVLC
501: DR

Best Arabidopsis Sequence Match ( AT4G09740.1 )
(BLAST)

001: MGKLLVVMLI GMFLAFESLE ALDYGDALNK SILFFEGQRS GKLPTNQRVK WRADSGLSDG ASANVNLIGG YYDAGDNVKF VWPMSFTTTL LSWAALEYQN
101: EITFVNQLGY LRSTIKWGTN FILRAHTSTN MLYTQVGDGN SDHSCWERPE DMDTPRTLYS ISSSSPGSEA AGEAAAALAA ASLVFKLVDS TYSSKLLNNA
201: KSLFEFADKY RGSYQASCPF YCSHSGYQDE LLWAAAWLYK ATGEKSYLNY VISNKDWSKA INEFSWDNKF AGVQALLASE FYNGANDLEK FKTDVESFVC
301: ALMPGSSSQQ IKPTPGGILF IRDSSNLQYV TTATTILFYY SKTLTKAGVG SIQCGSTQFT VSQIRNFAKS QVDYILGNNP LKMSYMVGFG TKYPTQPHHR
401: GSSLPSIQSK PEKIDCNGGF SYYNFDTPNP NVHTGAIVGG PNSSDQYSDK RTDYSHAEPT TYINAAFIGS VAALISSS

Arabidopsis Description

AtGH9B14Endoglucanase 18 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZ90]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.