Subcellular Localization
min:
: max
Winner_takes_all: golgi, vacuole
Predictor Summary:
Predictor Summary:
- nucleus 2
- extracellular 5
- endoplasmic reticulum 4
- vacuole 5
- plasma membrane 5
- golgi 5
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g083820.1.1 | Tomato | plastid | 96.28 | 83.13 |
| KRH39987 | Soybean | extracellular, vacuole | 60.23 | 52.43 |
| KRH23800 | Soybean | extracellular, vacuole | 59.3 | 51.31 |
| VIT_16s0022g00750.t01 | Wine grape | extracellular, vacuole | 58.6 | 50.5 |
| KRH23799 | Soybean | extracellular, nucleus, vacuole | 48.84 | 50.48 |
| KRH55742 | Soybean | vacuole | 56.74 | 50.21 |
| PGSC0003DMT400023082 | Potato | extracellular, vacuole | 53.95 | 47.44 |
| GSMUA_Achr11P... | Banana | cytosol | 53.26 | 46.73 |
| GSMUA_Achr11P... | Banana | vacuole | 53.02 | 45.6 |
| PGSC0003DMT400021687 | Potato | vacuole | 49.3 | 43.98 |
| PGSC0003DMT400008105 | Potato | endoplasmic reticulum, extracellular, vacuole | 50.0 | 43.43 |
| PGSC0003DMT400081314 | Potato | extracellular | 49.77 | 42.8 |
| PGSC0003DMT400031897 | Potato | endoplasmic reticulum, extracellular | 48.6 | 41.97 |
| PGSC0003DMT400001781 | Potato | extracellular, vacuole | 45.12 | 38.57 |
| PGSC0003DMT400069884 | Potato | extracellular, vacuole | 42.56 | 38.2 |
| PGSC0003DMT400031762 | Potato | extracellular | 43.95 | 37.65 |
| PGSC0003DMT400052749 | Potato | extracellular, vacuole | 40.23 | 35.6 |
| PGSC0003DMT400057164 | Potato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 33.26 | 33.73 |
| PGSC0003DMT400012809 | Potato | extracellular, vacuole | 42.09 | 33.52 |
| PGSC0003DMT400032028 | Potato | endoplasmic reticulum, extracellular, vacuole | 43.72 | 30.08 |
| PGSC0003DMT400051238 | Potato | extracellular | 41.86 | 28.48 |
Protein Annotations
| KEGG:00500+3.2.1.4 | Gene3D:1.50.10.10 | MapMan:35.1 | InterPro:6-hairpin_glycosidase_sf | InterPro:6hp_glycosidase-like_sf | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0004553 | GO:GO:0005575 | GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016787 | InterPro:Glyco_hydro_9 | InterPro:IPR012341 | UniProt:M1CPP0 |
| PFAM:PF00759 | EnsemblPlantsGene:PGSC0003DMG400028045 | PGSC:PGSC0003DMG400028045 | EnsemblPlants:PGSC0003DMT400072087 | PANTHER:PTHR22298 | PANTHER:PTHR22298:SF45 |
| SUPFAM:SSF48208 | TMHMM:TMhelix | UniParc:UPI0002961CB8 | SEG:seg | : | : |
Description
Endo-1,4-beta-glucanase [Source:PGSC_GENE;Acc:PGSC0003DMG400028045]
Coordinates
chr3:+:39589283..39591607
Molecular Weight (calculated)
48201.0 Da
IEP (calculated)
8.348
GRAVY (calculated)
-0.103
Length
430 amino acids
Sequence
(BLAST)
(BLAST)
001: MIGSGKFSLN CQVLRIIAAI FVCLIATVVA INVPNPNYAD ALTKSILFFE GQRSGKLPPN QRMTWRKDSA LLDGADKGVD LVGGYYDAGD NVKFHFPMAF
101: TTTMLAWSVE QFKNSMGPDL QHAMEAIRWS TDYFLKATNI PNVVFAQVFE FADKYRGSYN DHIGSWVCPF YCDYNGYKDE LLWAAAWLLK ATRKPMYWIY
201: VKQNIINFKS DMESGLSEFG WDAKHAGINV LISKFVLDNP SNANPFLPYA DTFVCSVLPE SPTNTVRYTP GGLMYKSGIC NMQNPTALSF LLLTYARYMK
301: SRVIRCGNID VTQKMLIRFA RSQVNYILGI NPMNMSYMVG FGTTFPQRIH HRGASLPSID QHPEKMGCKE GTPYFLSENP NPNLHIGAVV GGPDINDYFV
401: DSRPNAAQSE PTTYVNAPLV GLLAYFKAHP
101: TTTMLAWSVE QFKNSMGPDL QHAMEAIRWS TDYFLKATNI PNVVFAQVFE FADKYRGSYN DHIGSWVCPF YCDYNGYKDE LLWAAAWLLK ATRKPMYWIY
201: VKQNIINFKS DMESGLSEFG WDAKHAGINV LISKFVLDNP SNANPFLPYA DTFVCSVLPE SPTNTVRYTP GGLMYKSGIC NMQNPTALSF LLLTYARYMK
301: SRVIRCGNID VTQKMLIRFA RSQVNYILGI NPMNMSYMVG FGTTFPQRIH HRGASLPSID QHPEKMGCKE GTPYFLSENP NPNLHIGAVV GGPDINDYFV
401: DSRPNAAQSE PTTYVNAPLV GLLAYFKAHP
001: MAGKSFMTPA IMLAMLLLIS PETYAGHDYR DALRKSILFF EGQRSGKLPP DQRLKWRRDS ALRDGSSAGV DLTGGYYDAG DNVKFGFPMA FTTTMMSWSV
101: IDFGKTMGPE LENAVKAIKW GTDYLMKATQ IPDVVFVQVG DAYSDHNCWE RPEDMDTLRT VYKIDKDHSG SEVAGETAAA LAAASIVFEK RDPVYSKMLL
201: DRATRVFAFA QKYRGAYSDS LYQAVCPFYC DFNGYEDELL WGAAWLHKAS KKRVYREFIV KNQVILRAGD TIHEFGWDNK HAGINVLVSK MVLMGKAEYF
301: QSFKQNADEF ICSLLPGISH PQVQYSQGGL LVKSGGSNMQ HVTSLSFLLL TYSNYLSHAN KVVPCGEFTA SPALLRQVAK RQVDYILGDN PMKMSYMVGY
401: GSRFPQKIHH RGSSVPSVVD HPDRIGCKDG SRYFFSNNPN PNLLIGAVVG GPNITDDFPD SRPYFQLTEP TTYINAPLLG LLGYFSAHY
101: IDFGKTMGPE LENAVKAIKW GTDYLMKATQ IPDVVFVQVG DAYSDHNCWE RPEDMDTLRT VYKIDKDHSG SEVAGETAAA LAAASIVFEK RDPVYSKMLL
201: DRATRVFAFA QKYRGAYSDS LYQAVCPFYC DFNGYEDELL WGAAWLHKAS KKRVYREFIV KNQVILRAGD TIHEFGWDNK HAGINVLVSK MVLMGKAEYF
301: QSFKQNADEF ICSLLPGISH PQVQYSQGGL LVKSGGSNMQ HVTSLSFLLL TYSNYLSHAN KVVPCGEFTA SPALLRQVAK RQVDYILGDN PMKMSYMVGY
401: GSRFPQKIHH RGSSVPSVVD HPDRIGCKDG SRYFFSNNPN PNLLIGAVVG GPNITDDFPD SRPYFQLTEP TTYINAPLLG LLGYFSAHY
Arabidopsis Description
AtGH9B6Endoglucanase 4 [Source:UniProtKB/Swiss-Prot;Acc:O49296]
SUBAcon: [endoplasmic reticulum,extracellular,vacuole]
SUBAcon: [endoplasmic reticulum,extracellular,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.