Factsheet for PGSC0003DMT400023082

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, vacuole

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 6
plasma membrane 6
golgi 5
nucleus 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, vacuole
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	extracellular, plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g010210.2.1	Tomato	plastid	96.73	96.73
AT1G70710.1	Thale cress	vacuole	78.94	78.46
CDX68334	Canola	endoplasmic reticulum	78.12	78.28
KRH41678	Soybean	nucleus	78.53	78.21
KRH60381	Soybean	nucleus	78.53	78.05
CDY23486	Canola	extracellular	77.71	77.87
Bra003946.1-P	Field mustard	extracellular	77.71	77.87
Bra016192.1-P	Field mustard	extracellular, vacuole	78.12	76.55
CDX96271	Canola	extracellular, vacuole	78.12	76.55
CDY11552	Canola	endoplasmic reticulum, extracellular	77.91	76.35
AT1G23210.1	Thale cress	endoplasmic reticulum, extracellular, vacuole	75.66	75.66
Bra024571.1-P	Field mustard	extracellular	76.07	75.3
CDY21424	Canola	extracellular	76.07	75.3
CDY04737	Canola	extracellular, vacuole	75.66	75.2
HORVU6Hr1G073570.3	Barley	extracellular	72.19	71.03
GSMUA_Achr5P05960_001	Banana	extracellular, vacuole	72.39	70.94
Os06t0256900-01	Rice	endoplasmic reticulum, extracellular, vacuole	71.98	70.83
TraesCS6B01G325400.1	Wheat	extracellular	71.57	70.56
TraesCS7D01G207600.1	Wheat	extracellular	71.98	70.54
TraesCS6A01G295300.1	Wheat	extracellular	71.37	70.36
HORVU7Hr1G041610.1	Barley	vacuole	72.19	70.32
TraesCS6D01G275900.1	Wheat	extracellular	71.57	70.28
TraesCS7A01G204500.1	Wheat	extracellular	71.78	69.78
Os02t0733300-01	Rice	extracellular	71.78	69.09
Zm00001d037338_P001	Maize	vacuole	70.14	68.6
Zm00001d017949_P001	Maize	extracellular	67.89	68.45
EES07307	Sorghum	vacuole	70.55	68.45
TraesCS7B01G111700.1	Wheat	extracellular	72.19	66.86
EER89549	Sorghum	mitochondrion	71.37	62.1
PGSC0003DMT400008105	Potato	endoplasmic reticulum, extracellular, vacuole	57.87	57.17
PGSC0003DMT400081314	Potato	extracellular	57.87	56.6
PGSC0003DMT400072087	Potato	golgi, vacuole	47.44	53.95
PGSC0003DMT400021687	Potato	vacuole	52.76	53.53
PGSC0003DMT400031897	Potato	endoplasmic reticulum, extracellular	54.19	53.21
PGSC0003DMT400031762	Potato	extracellular	48.47	47.21
PGSC0003DMT400069884	Potato	extracellular, vacuole	46.01	46.97
PGSC0003DMT400052749	Potato	extracellular, vacuole	46.42	46.71
PGSC0003DMT400001781	Potato	extracellular, vacuole	45.6	44.33
PGSC0003DMT400057164	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	37.63	43.4
PGSC0003DMT400032028	Potato	endoplasmic reticulum, extracellular, vacuole	48.26	37.76
PGSC0003DMT400012809	Potato	extracellular, vacuole	39.88	36.11
PGSC0003DMT400051238	Potato	extracellular	46.63	36.08

Protein Annotations

KEGG:00500+3.2.1.4	Gene3D:1.50.10.10	EntrezGene:102592181	MapMan:35.1	InterPro:6-hairpin_glycosidase_sf	InterPro:6hp_glycosidase-like_sf
GO:GO:0000272	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0008810	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0016798
GO:GO:0030245	InterPro:Glyco_hydro_9	InterPro:Glyco_hydro_9_Asp/Glu_AS	InterPro:IPR012341	UniProt:M1AHR1	PFAM:PF00759
EnsemblPlantsGene:PGSC0003DMG400008938	PGSC:PGSC0003DMG400008938	EnsemblPlants:PGSC0003DMT400023082	ScanProsite:PS00698	PANTHER:PTHR22298	PANTHER:PTHR22298:SF28
SUPFAM:SSF48208	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI000296EFD7	RefSeq:XP_006341076.1	SEG:seg

Description

Endo-1,4-beta-glucanase [Source:PGSC_GENE;Acc:PGSC0003DMG400008938]

Coordinates

chr9:-:2345621..2351097

Molecular Weight (calculated)

54159.4 Da

IEP (calculated)

7.905

GRAVY (calculated)

-0.155

Length

489 amino acids

Sequence
(BLAST)

001: MAPKYTSLIF LFLLLNSFSY SFGGGHDYHD ALRKSILFFE GQRSGKLPPD QRIKWRRDSA LHDGASAGVD LTGGYYDAGD NVKFVFPMAF TTTLLSWSII
101: DFKRNIGNEL GNAVKAVKWG TDFLLKATAK EGVIYVQVGD AFSDHSCWER PEDMDTLRTV YKIDENHPGS EVAGEIAAAL AAASIVFRSL DSSYSNLLLD
201: RAVKVFDFAN RHRGAYSSSL HSAVCPFYCD FDGYQDELLW GAAWLHKATR RRQYREYIVK NEVILRAGDT INEFGWDNKH AGINVLISKE VLMGKAPDLK
301: SFQVNADAFI CSILPGISHP QVQYSPGGLI VKPGVCNMQH VTSLSFLLLT YSNYLSHANH VVPCGSMTAT PALLKHIAKR QVDYILGDNP QRMSYMVGYG
401: PHYPLRIHHR GSSVPSVAAH SARIGCKEGS HYFFSPNPNP NRLIGAVVGG PNLTDSFPDA RPFFQESEPT TYVNAPLVGL LAYFSAHPN

Best Arabidopsis Sequence Match ( AT1G70710.1 )
(BLAST)

001: MARKSLIFPV ILLAVLLFSP PIYSAGHDYR DALRKSILFF EGQRSGKLPP DQRLKWRRDS ALRDGSSAGV DLSGGYYDAG DNIKFGFPMA FTTTMLSWSI
101: IDFGKTMGPE LRNAVKAVKW GTDYLLKATA IPGVVFVQVG DAYSDHNCWE RPEDMDTLRT VYKIDRAHPG SDVAGETAAA LAAASIVFRK RDPAYSRLLL
201: DRATRVFAFA NRYRGAYSNS LYHAVCPFYC DFNGYQDELL WGAAWLHKAS RKRAYREFIV KNEVILKAGD TINEFGWDNK HAGINVLISK EVLMGKAEYF
301: ESFKQNADGF ICSILPGISH PQVQYSRGGL LVKTGGSNMQ HVTSLSFLLL AYSNYLSHAK KVVPCGELTA SPSLLRQIAK RQVDYILGDN PMGLSYMVGY
401: GQKFPRRIHH RGSSVPSVSA HPSHIGCKEG SRYFLSPNPN PNLLVGAVVG GPNVTDAFPD SRPYFQQSEP TTYINAPLVG LLGYFSAHST WR

Arabidopsis Description

CEL1Endoglucanase 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAC1]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.