Factsheet for PGSC0003DMT400057164

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, plastid, cytosol, plasma membrane, golgi, nucleus

Predictor Summary:

nucleus 3
plastid 1
plasma membrane 3
extracellular 3
endoplasmic reticulum 2
vacuole 2
golgi 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid, secretory
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	plastid
Plant-mPloc:	extracellular, plasma membrane
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g064870.2.1	Tomato	mitochondrion	95.52	75.98
VIT_19s0090g01050.t01	Wine grape	extracellular, vacuole	71.46	59.41
PGSC0003DMT400001781	Potato	extracellular, vacuole	68.16	57.46
KRH73794	Soybean	vacuole	69.1	56.89
KRH14332	Soybean	vacuole	69.58	55.45
PGSC0003DMT400069884	Potato	extracellular, vacuole	49.06	43.42
PGSC0003DMT400032028	Potato	endoplasmic reticulum, extracellular, vacuole	56.6	38.4
PGSC0003DMT400023082	Potato	extracellular, vacuole	43.4	37.63
PGSC0003DMT400081314	Potato	extracellular	43.63	37.0
PGSC0003DMT400031897	Potato	endoplasmic reticulum, extracellular	42.92	36.55
PGSC0003DMT400052749	Potato	extracellular, vacuole	41.75	36.42
PGSC0003DMT400051238	Potato	extracellular	53.3	35.76
PGSC0003DMT400008105	Potato	endoplasmic reticulum, extracellular, vacuole	40.8	34.95
PGSC0003DMT400031762	Potato	extracellular	41.27	34.86
PGSC0003DMT400021687	Potato	vacuole	39.62	34.85
PGSC0003DMT400012809	Potato	extracellular, vacuole	42.69	33.52
PGSC0003DMT400072087	Potato	golgi, vacuole	33.73	33.26

Protein Annotations

KEGG:00500+3.2.1.4	Gene3D:1.50.10.10	MapMan:35.1	InterPro:6-hairpin_glycosidase_sf	InterPro:6hp_glycosidase-like_sf	GO:GO:0000272
GO:GO:0003674	GO:GO:0003824	GO:GO:0004553	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152
GO:GO:0008810	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0016798	GO:GO:0030245
InterPro:Glyco_hydro_9	InterPro:Glyco_hydro_9_His_AS	InterPro:IPR012341	UniProt:M1C0J8	PFAM:PF00759	EnsemblPlantsGene:PGSC0003DMG400022208
PGSC:PGSC0003DMG400022208	EnsemblPlants:PGSC0003DMT400057164	ScanProsite:PS00592	PANTHER:PTHR22298	PANTHER:PTHR22298:SF96	SUPFAM:SSF48208
UniParc:UPI000295BBD7	SEG:seg	:	:	:	:

Description

Endo-1,4-beta-glucanase [Source:PGSC_GENE;Acc:PGSC0003DMG400022208]

Coordinates

chr7:-:55054209..55059059

Molecular Weight (calculated)

48101.5 Da

IEP (calculated)

7.873

GRAVY (calculated)

-0.527

Length

424 amino acids

Sequence
(BLAST)

001: MAFTITMLSW SVIEYGEDIA AAGEYRYALE AIKWGTDYFV KAHTHPNVLW IQVGEGDTDH YCWQRPEDMT TSRRAYKIDE DHPGSDVAGE TAAALAAASI
101: VFRRTNPHYS NLLLVHAEQL FEFGDKFRGK YDTSVGAAKG YYPSLSGYKD ELLWAAMWLY KATDKSHYLK YALQNAQSFG GTTWAISEFS WDVKYAGLQL
201: LASTLPRQGK GEKEDDKILE EYRSKGEYYV CSCLNQNNKT NVHRTPGGLL YIRQWNNMQY VSNAAFLLMV YSDHLRETNQ MARCERRSVG PEEIFAFAKS
301: QVDYILGLNP RGVSYLVGYG PKYPQRVHHR GASVDSFKKR KSFISCTQGY DNWFGRKNSN PNTLVGALVG GPDNKDRFND HRKNFMQTEA CTYNTAPLVG
401: LFAKLNGLDR GTDNIEDSLL FSAK

Best Arabidopsis Sequence Match ( AT2G32990.1 )
(BLAST)

001: MTVMNHRHKQ CHFLLLLLIT VFSAALDGVS SETDVGGFDY GEALSKSLLY FEAQRSGRLP YNQRVTWRDH SGLTDGLEQG VDLVGGYHDA GDHVKFGLPM
101: AFTVTMLSWS VIEYGDSLAS TGELSHALEA IKWGTDYFIK AHTSPNVLWA EVGDGDTDHY CWQRPEDMTT SRRAFKIDEN NPGSDIAGET AAAMAAASIV
201: FRSTNPHYSH LLLHHAQQLF EFGDKYRGKY DESLKVVKSY YASVSGYMDE LLWGATWLYR ATDNEHYMSY VVDMAHQLGG LSWAMSEFSW DVKFAGVQLL
301: ASMLLKEEKH KQHSKVLQQY KSKADHYLCS ILNKNINGTN VQRTPAGLLY VRQWNNMQYV STASFLLTVY SDHLRKSNTD LECHEGTVTP DEMLGFAKSQ
401: IDYILGSNPM ETSYLVGYGP KYPIRVHHRG ASIASFKEHK GFIGCTQGYD NWYGRSEPNP SVLVGALVGG PDHQDDFDDR RGNYVQTEAC TYNTAPLVGV
501: FARLIELEEQ KLEEEDVSLV ATYKR

Arabidopsis Description

AtGH9B8Endoglucanase 11 [Source:UniProtKB/Swiss-Prot;Acc:O48766]
SUBAcon: [extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.