Factsheet for PGSC0003DMT400051238

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 9
golgi 5
plasma membrane 6
endoplasmic reticulum 5
vacuole 6

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
EpiLoc:	extracellular
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	extracellular, plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g014220.2.1	Tomato	extracellular	97.94	97.94
VIT_01s0011g02170.t01	Wine grape	endoplasmic reticulum, extracellular	71.99	73.98
KRH24186	Soybean	extracellular, vacuole	71.36	71.7
KRH29156	Soybean	extracellular, vacuole	70.25	70.81
CDY60076	Canola	extracellular	26.9	70.25
Bra018765.1-P	Field mustard	vacuole	67.56	68.43
CDX93707	Canola	vacuole	67.41	68.27
Bra032270.1-P	Field mustard	extracellular	65.51	67.98
CDY59895	Canola	cytosol, vacuole	54.27	67.65
CDY60075	Canola	vacuole	66.93	67.57
CDY65179	Canola	extracellular	66.77	67.41
AT1G48930.1	Thale cress	vacuole	66.61	67.15
GSMUA_Achr2P03770_001	Banana	vacuole	59.81	62.07
Os04t0674800-01	Rice	extracellular	55.7	56.32
EES13091	Sorghum	vacuole	55.38	55.56
Zm00001d026605_P001	Maize	vacuole	54.91	55.52
PGSC0003DMT400001781	Potato	extracellular, vacuole	43.35	54.47
TraesCS2D01G557500.1	Wheat	extracellular	52.69	53.97
TraesCS2B01G586600.1	Wheat	extracellular	52.22	53.75
HORVU2Hr1G120100.1	Barley	extracellular	52.22	53.57
PGSC0003DMT400057164	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	35.76	53.3
PGSC0003DMT400069884	Potato	extracellular, vacuole	40.35	53.24
TraesCS2A01G556300.1	Wheat	vacuole	53.01	51.94
PGSC0003DMT400032028	Potato	endoplasmic reticulum, extracellular, vacuole	49.37	49.92
PGSC0003DMT400012809	Potato	extracellular, vacuole	40.98	47.96
PGSC0003DMT400023082	Potato	extracellular, vacuole	36.08	46.63
PGSC0003DMT400021687	Potato	vacuole	34.65	45.44
PGSC0003DMT400031762	Potato	extracellular	35.92	45.22
PGSC0003DMT400052749	Potato	extracellular, vacuole	34.65	45.06
PGSC0003DMT400031897	Potato	endoplasmic reticulum, extracellular	35.44	44.98
PGSC0003DMT400081314	Potato	extracellular	34.18	43.2
PGSC0003DMT400008105	Potato	endoplasmic reticulum, extracellular, vacuole	33.39	42.63
PGSC0003DMT400072087	Potato	golgi, vacuole	28.48	41.86

Protein Annotations

KEGG:00500+3.2.1.4	Gene3D:1.50.10.10	EntrezGene:102605883	MapMan:35.1	InterPro:6-hairpin_glycosidase_sf	InterPro:6hp_glycosidase-like_sf
InterPro:CBM_49	GO:GO:0000272	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553	GO:GO:0005488
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0008810	GO:GO:0009056	GO:GO:0009987
GO:GO:0016787	GO:GO:0016798	GO:GO:0030245	GO:GO:0030246	InterPro:Glyco_hydro_9	InterPro:Glyco_hydro_9_His_AS
InterPro:IPR012341	UniProt:M1BRH2	PFAM:PF00759	PFAM:PF09478	EnsemblPlantsGene:PGSC0003DMG400019898	PGSC:PGSC0003DMG400019898
EnsemblPlants:PGSC0003DMT400051238	ScanProsite:PS00592	PANTHER:PTHR22298	PANTHER:PTHR22298:SF41	SMART:SM01063	SUPFAM:SSF48208
SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI000296971F	RefSeq:XP_006354983.1	SEG:seg	:

Description

Glycosyl hydrolase family 9 [Source:PGSC_GENE;Acc:PGSC0003DMG400019898]

Coordinates

chr2:+:8993370..8997594

Molecular Weight (calculated)

69726.4 Da

IEP (calculated)

7.643

GRAVY (calculated)

-0.237

Length

632 amino acids

Sequence
(BLAST)

001: MGISSKLQVI SVLLVGLLAL EAVSYNFNYG DAMDKTLLFF EAQRSGKLPP NQRVKWRGDS GLKDGFLQGV NLVGGYYDAG DHVKFGLPMA YSLTMLGWSV
101: VDYRKEIADL NQMGNTLAAI KWGTDYFIKA HTQPNVLWAQ VGDGDSDHYC WERAEDMTTP RTAYKLDPSH PGSDLAGEAA AALAAASLAF KPYDSSYSNL
201: LLVHAKQLFS FADTFRGLYD DSIPNAQAFY TSSGYSDELL WAAAWLYRAT YDEYYLKYVV DNAVSLGGTG WAVKEFSWDN KYAGVQILLT KILLDGAGGS
301: YTPTLKQYQA KADYFTCACL QKNDGYNVAL TPGGLIYVRE WNNLQYASSA AFLLAMYSDY LSEKKIVLTC PEGQVQPSDV LSFAKSQADY ILGKNPKAIS
401: YLVGYGQNYP IHVHHRGASI APISVLHTAV SCIEGFETWY RRPQANPNII HGALLGGPSK TDDFSDDRSN YEQTEPTLSG SAPLIGLFVK LQSLSGYPGS
501: YRHTSPTPYQ KPPASYHPQP STPYYKAPGS SNYKAPGAPV TFLHSIISTW TIGPTTYYKH RVVVKNTSQK QITNLKLIIE NLSGSLWGLS PCPEKNTYEL
601: PQWIKILKPG SELTFVYVQG GAQAKVSIKS YH

Best Arabidopsis Sequence Match ( AT1G48930.1 )
(BLAST)

001: MRKFGGSLFG VSLLLSVLLA AATAAAEYYN YGSALDKTFL FFEAQRSGKL PAAQRVKWRG PSGLKDGLAQ GVSLEGGYYD AGDHVKFGLP MAFAVTMLSW
101: AAVDNRKELS SSNQMQQTLW SIRWGTDYFI KAHPQPNVLW GQVGDGESDH YCWERPEDMT TSRTAYKLDP YHPGSDLAGE TAAALAAASL AFKPFNSSYS
201: ALLLSHAKEL FSFADKYRGL YTNSIPNAKA FYMSSGYSDE LLWAAAWLHR ATGDQYYLKY AMDNSGYMGG TGWGVKEFSW DNKYAGVQIL LSKILLEGKG
301: GIYTSTLKQY QTKADYFACA CLKKNGGYNI QTTPGGLMYV REWNNLQYAS AAAYLLAVYS DYLSAANAKL NCPDGLVQPQ GLLDFARSQA DYILGKNRQG
401: MSYVVGYGPK YPIRVHHRGS SIPSIFAQRS SVSCVQGFDS WYRRSQGDPN VIYGALVGGP DENDNYSDDR SNYEQSEPTL SGTAPLVGLF AKLYGGSLGS
501: YGGGSYKPYE TTKPAASSYK ATPTTYSPKQ SGAQIEFLHS ITSNWIAGNT RYYRHKVIIK NNSQKPISDL KLKIEDLSGP IWGLNPTGQK YTYQLPQWQK
601: TLRAGQAYDF VYVQGGPQAK VSVLSYN

Arabidopsis Description

AtGH9C1Endoglucanase 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9M995]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.