Subcellular Localization
min:
: max
Winner_takes_all: vacuole
Predictor Summary:
Predictor Summary:
- extracellular 6
- golgi 5
- endoplasmic reticulum 5
- plasma membrane 4
- vacuole 6
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY60076 | Canola | extracellular | 35.41 | 91.74 |
| CDX93707 | Canola | vacuole | 90.11 | 90.54 |
| Bra018765.1-P | Field mustard | vacuole | 90.11 | 90.54 |
| Bra032270.1-P | Field mustard | extracellular | 87.88 | 90.48 |
| CDY65179 | Canola | extracellular | 89.95 | 90.1 |
| CDY60075 | Canola | vacuole | 89.95 | 90.1 |
| CDY59895 | Canola | cytosol, vacuole | 72.41 | 89.55 |
| VIT_01s0011g02170.t01 | Wine grape | endoplasmic reticulum, extracellular | 67.46 | 68.78 |
| PGSC0003DMT400051238 | Potato | extracellular | 67.15 | 66.61 |
| KRH24186 | Soybean | extracellular, vacuole | 66.19 | 65.98 |
| Solyc02g014220.2.1 | Tomato | extracellular | 66.35 | 65.82 |
| KRH29156 | Soybean | extracellular, vacuole | 65.39 | 65.39 |
| GSMUA_Achr2P03770_001 | Banana | vacuole | 56.46 | 58.13 |
| EES13091 | Sorghum | vacuole | 55.02 | 54.76 |
| Os04t0674800-01 | Rice | extracellular | 54.23 | 54.4 |
| Zm00001d026605_P001 | Maize | vacuole | 54.07 | 54.24 |
| TraesCS2D01G557500.1 | Wheat | extracellular | 52.47 | 53.32 |
| AT2G32990.1 | Thale cress | extracellular, vacuole | 44.34 | 52.95 |
| HORVU2Hr1G120100.1 | Barley | extracellular | 51.67 | 52.6 |
| TraesCS2B01G586600.1 | Wheat | extracellular | 51.2 | 52.28 |
| AT2G44550.1 | Thale cress | extracellular, plasma membrane, vacuole | 40.51 | 51.84 |
| AT2G44570.1 | Thale cress | extracellular | 40.19 | 51.22 |
| AT2G44540.1 | Thale cress | vacuole | 40.03 | 51.12 |
| TraesCS2A01G556300.1 | Wheat | vacuole | 52.31 | 50.85 |
| AT2G44560.1 | Thale cress | extracellular, vacuole | 39.71 | 50.71 |
| AT4G23560.1 | Thale cress | extracellular | 37.64 | 49.27 |
| AT4G11050.1 | Thale cress | vacuole | 48.8 | 48.88 |
| AT4G09740.1 | Thale cress | extracellular | 36.84 | 48.33 |
| AT1G70710.1 | Thale cress | vacuole | 35.73 | 45.53 |
| AT1G22880.1 | Thale cress | extracellular | 34.61 | 44.83 |
| AT1G02800.1 | Thale cress | extracellular, vacuole | 35.57 | 44.51 |
| AT1G71380.1 | Thale cress | extracellular | 34.13 | 44.21 |
| AT1G23210.1 | Thale cress | endoplasmic reticulum, extracellular, vacuole | 34.29 | 43.97 |
| AT4G02290.1 | Thale cress | plastid | 35.89 | 43.6 |
| AT4G39010.1 | Thale cress | extracellular, vacuole | 34.45 | 43.46 |
| AT4G39000.1 | Thale cress | extracellular, vacuole | 34.13 | 43.41 |
| AT3G43860.1 | Thale cress | extracellular, vacuole | 32.85 | 42.39 |
Protein Annotations
| KEGG:00500+3.2.1.4 | Gene3D:1.50.10.10 | MapMan:35.1 | InterPro:6-hairpin_glycosidase_sf | InterPro:6hp_glycosidase-like_sf | EntrezGene:841315 |
| ProteinID:AAF69707.1 | ProteinID:AEE32368.1 | ArrayExpress:AT1G48930 | EnsemblPlantsGene:AT1G48930 | RefSeq:AT1G48930 | TAIR:AT1G48930 |
| RefSeq:AT1G48930-TAIR-G | EnsemblPlants:AT1G48930.1 | TAIR:AT1G48930.1 | Unigene:At.16674 | Symbol:AtGH9C1 | EMBL:BT002935 |
| EMBL:BT005638 | InterPro:CBM_49 | GO:GO:0000272 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004553 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005576 | GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008810 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016787 | GO:GO:0016798 |
| GO:GO:0030245 | GO:GO:0030246 | GO:GO:0071555 | InterPro:Glyco_hydro_9 | InterPro:Glyco_hydro_9_His_AS | InterPro:IPR012341 |
| RefSeq:NP_175323.1 | PFAM:PF00759 | PFAM:PF09478 | PO:PO:0000256 | PO:PO:0000262 | PO:PO:0009005 |
| ScanProsite:PS00592 | PANTHER:PTHR22298 | PANTHER:PTHR22298:SF41 | UniProt:Q9M995 | SMART:SM01063 | SUPFAM:SSF48208 |
| SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI000000BE49 | SEG:seg | : | : |
Description
AtGH9C1Endoglucanase 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9M995]
Coordinates
chr1:-:18101643..18104768
Molecular Weight (calculated)
69083.2 Da
IEP (calculated)
9.176
GRAVY (calculated)
-0.379
Length
627 amino acids
Sequence
(BLAST)
(BLAST)
001: MRKFGGSLFG VSLLLSVLLA AATAAAEYYN YGSALDKTFL FFEAQRSGKL PAAQRVKWRG PSGLKDGLAQ GVSLEGGYYD AGDHVKFGLP MAFAVTMLSW
101: AAVDNRKELS SSNQMQQTLW SIRWGTDYFI KAHPQPNVLW GQVGDGESDH YCWERPEDMT TSRTAYKLDP YHPGSDLAGE TAAALAAASL AFKPFNSSYS
201: ALLLSHAKEL FSFADKYRGL YTNSIPNAKA FYMSSGYSDE LLWAAAWLHR ATGDQYYLKY AMDNSGYMGG TGWGVKEFSW DNKYAGVQIL LSKILLEGKG
301: GIYTSTLKQY QTKADYFACA CLKKNGGYNI QTTPGGLMYV REWNNLQYAS AAAYLLAVYS DYLSAANAKL NCPDGLVQPQ GLLDFARSQA DYILGKNRQG
401: MSYVVGYGPK YPIRVHHRGS SIPSIFAQRS SVSCVQGFDS WYRRSQGDPN VIYGALVGGP DENDNYSDDR SNYEQSEPTL SGTAPLVGLF AKLYGGSLGS
501: YGGGSYKPYE TTKPAASSYK ATPTTYSPKQ SGAQIEFLHS ITSNWIAGNT RYYRHKVIIK NNSQKPISDL KLKIEDLSGP IWGLNPTGQK YTYQLPQWQK
601: TLRAGQAYDF VYVQGGPQAK VSVLSYN
101: AAVDNRKELS SSNQMQQTLW SIRWGTDYFI KAHPQPNVLW GQVGDGESDH YCWERPEDMT TSRTAYKLDP YHPGSDLAGE TAAALAAASL AFKPFNSSYS
201: ALLLSHAKEL FSFADKYRGL YTNSIPNAKA FYMSSGYSDE LLWAAAWLHR ATGDQYYLKY AMDNSGYMGG TGWGVKEFSW DNKYAGVQIL LSKILLEGKG
301: GIYTSTLKQY QTKADYFACA CLKKNGGYNI QTTPGGLMYV REWNNLQYAS AAAYLLAVYS DYLSAANAKL NCPDGLVQPQ GLLDFARSQA DYILGKNRQG
401: MSYVVGYGPK YPIRVHHRGS SIPSIFAQRS SVSCVQGFDS WYRRSQGDPN VIYGALVGGP DENDNYSDDR SNYEQSEPTL SGTAPLVGLF AKLYGGSLGS
501: YGGGSYKPYE TTKPAASSYK ATPTTYSPKQ SGAQIEFLHS ITSNWIAGNT RYYRHKVIIK NNSQKPISDL KLKIEDLSGP IWGLNPTGQK YTYQLPQWQK
601: TLRAGQAYDF VYVQGGPQAK VSVLSYN
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.