Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 5
- golgi 5
- extracellular 7
- vacuole 5
- plasma membrane 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT4G09740.1 | Thale cress | extracellular | 91.65 | 91.84 |
| CDY44116 | Canola | extracellular | 86.22 | 86.04 |
| Bra013709.1-P | Field mustard | extracellular | 86.22 | 86.04 |
| CDY10895 | Canola | extracellular | 85.59 | 85.42 |
| CDX94202 | Canola | vacuole | 82.67 | 82.5 |
| CDY10945 | Canola | extracellular, vacuole | 82.25 | 82.08 |
| Bra019296.1-P | Field mustard | extracellular, vacuole | 82.25 | 82.08 |
| VIT_02s0025g00430.t01 | Wine grape | extracellular, vacuole | 70.77 | 67.4 |
| KRH27886 | Soybean | extracellular | 70.56 | 66.14 |
| Solyc08g081620.2.1 | Tomato | extracellular | 66.18 | 63.27 |
| PGSC0003DMT400031762 | Potato | extracellular | 65.97 | 62.95 |
| TraesCS1D01G090100.1 | Wheat | extracellular | 59.29 | 56.46 |
| TraesCS1B01G107700.1 | Wheat | extracellular | 58.87 | 55.73 |
| EES13778 | Sorghum | extracellular | 59.71 | 55.32 |
| TraesCS1A01G088700.1 | Wheat | extracellular | 58.25 | 55.14 |
| Zm00001d032271_P001 | Maize | extracellular | 58.66 | 54.99 |
| Os08t0387400-01 | Rice | extracellular | 58.25 | 54.07 |
| HORVU1Hr1G019520.1 | Barley | golgi, mitochondrion, vacuole | 58.87 | 52.91 |
| AT1G02800.1 | Thale cress | extracellular, vacuole | 53.03 | 50.7 |
| AT1G22880.1 | Thale cress | extracellular | 49.48 | 48.97 |
| AT1G71380.1 | Thale cress | extracellular | 49.48 | 48.97 |
| AT2G44560.1 | Thale cress | extracellular, vacuole | 50.1 | 48.88 |
| AT2G44540.1 | Thale cress | vacuole | 49.69 | 48.47 |
| AT2G44550.1 | Thale cress | extracellular, plasma membrane, vacuole | 49.06 | 47.96 |
| AT4G39010.1 | Thale cress | extracellular, vacuole | 49.27 | 47.48 |
| AT4G02290.1 | Thale cress | plastid | 51.15 | 47.48 |
| AT2G44570.1 | Thale cress | extracellular | 48.43 | 47.15 |
| AT1G23210.1 | Thale cress | endoplasmic reticulum, extracellular, vacuole | 48.02 | 47.03 |
| AT1G70710.1 | Thale cress | vacuole | 48.02 | 46.75 |
| AT3G43860.1 | Thale cress | extracellular, vacuole | 46.14 | 45.47 |
| AT4G39000.1 | Thale cress | extracellular, vacuole | 44.26 | 43.0 |
| AT2G32990.1 | Thale cress | extracellular, vacuole | 46.35 | 42.29 |
| AT1G48930.1 | Thale cress | vacuole | 49.27 | 37.64 |
| AT4G11050.1 | Thale cress | vacuole | 48.02 | 36.74 |
Protein Annotations
| KEGG:00500+3.2.1.4 | Gene3D:1.50.10.10 | MapMan:35.1 | InterPro:6-hairpin_glycosidase_sf | InterPro:6hp_glycosidase-like_sf | EntrezGene:828456 |
| ProteinID:AEE84775.1 | ArrayExpress:AT4G23560 | EnsemblPlantsGene:AT4G23560 | RefSeq:AT4G23560 | TAIR:AT4G23560 | RefSeq:AT4G23560-TAIR-G |
| EnsemblPlants:AT4G23560.1 | TAIR:AT4G23560.1 | Symbol:AtGH9B15 | ProteinID:CAA23022.1 | ProteinID:CAB79311.1 | GO:GO:0000272 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004553 | GO:GO:0005575 | GO:GO:0005576 | GO:GO:0005975 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008810 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016043 |
| GO:GO:0016787 | GO:GO:0016798 | GO:GO:0030245 | GO:GO:0071555 | InterPro:Glyco_hydro_9 | InterPro:Glyco_hydro_9_Asp/Glu_AS |
| InterPro:Glyco_hydro_9_His_AS | InterPro:IPR012341 | RefSeq:NP_194087.1 | PFAM:PF00759 | ScanProsite:PS00592 | ScanProsite:PS00698 |
| PANTHER:PTHR22298 | PANTHER:PTHR22298:SF22 | UniProt:Q9SUS0 | SUPFAM:SSF48208 | SignalP:SignalP-noTM | UniParc:UPI00000A20EB |
| SEG:seg | : | : | : | : | : |
Description
AtGH9B15Endoglucanase 20 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUS0]
Coordinates
chr4:-:12293117..12295859
Molecular Weight (calculated)
52452.4 Da
IEP (calculated)
6.313
GRAVY (calculated)
-0.234
Length
479 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKLLVLMLV GMFLAFESLE ALEYGDALNK SILFFEGQRS GKLPTNQRVK WRADSALSDG SLANVNLIGG YYDAGDNVKF VWPMSFTTTL LSWAAIEYQN
101: EISSVNQLGY LRSTIKWGTD FILRAHTSPN MLYTQVGDGN SDHSCWERPE DMDTSRTLYS ISSSSPGSEA AGEAAAALAA ASLVFKSVDS TYSSTLLNHA
201: KTLFEFADKY RGSYQASCPF YCSYSGYQDE LLWAAAWLYK ATGDKIYINY VISNKDWSQA VNEFSWDNKF VGAQALLVSE FYNGANDLAK FKSDVESFVC
301: AMMPGSSSQQ IKPTPGGLLF IRDSSNLQYV TTATTVLFHY SKTLTKAGVG SIQCGSTKFT VSQIRNFAKS QVDYILGNNP MKMSYMVGFG TKYPTQPHHR
401: GSSLPSIQSK PEKIDCNGGY SYYNSDTPNP NVHIGAIVGG PNSSDQYSDK KSDYSHAEPT TYINAAFIGP VAALISSSG
101: EISSVNQLGY LRSTIKWGTD FILRAHTSPN MLYTQVGDGN SDHSCWERPE DMDTSRTLYS ISSSSPGSEA AGEAAAALAA ASLVFKSVDS TYSSTLLNHA
201: KTLFEFADKY RGSYQASCPF YCSYSGYQDE LLWAAAWLYK ATGDKIYINY VISNKDWSQA VNEFSWDNKF VGAQALLVSE FYNGANDLAK FKSDVESFVC
301: AMMPGSSSQQ IKPTPGGLLF IRDSSNLQYV TTATTVLFHY SKTLTKAGVG SIQCGSTKFT VSQIRNFAKS QVDYILGNNP MKMSYMVGFG TKYPTQPHHR
401: GSSLPSIQSK PEKIDCNGGY SYYNSDTPNP NVHIGAIVGG PNSSDQYSDK KSDYSHAEPT TYINAAFIGP VAALISSSG
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.