Factsheet for VIT_02s0025g00430.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, vacuole

Predictor Summary:

nucleus 2
extracellular 6
endoplasmic reticulum 4
vacuole 5
plasma membrane 5
golgi 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, vacuole
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	extracellular, plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_19s0015g00430.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G23560.1	VIT_19s0015g00430.t01	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra013709.1-P	Field mustard	extracellular	67.79	71.04
CDY44116	Canola	extracellular	67.79	71.04
KRH27886	Soybean	extracellular	71.97	70.84
AT4G23560.1	Thale cress	extracellular	67.4	70.77
CDY10895	Canola	extracellular	67.0	70.21
PGSC0003DMT400031762	Potato	extracellular	69.98	70.12
Solyc08g081620.2.1	Tomato	extracellular	69.78	70.06
AT4G09740.1	Thale cress	extracellular	66.4	69.87
CDX94202	Canola	vacuole	66.0	69.17
Bra019296.1-P	Field mustard	extracellular, vacuole	65.61	68.75
CDY10945	Canola	extracellular, vacuole	65.61	68.75
EES13778	Sorghum	extracellular	61.23	59.57
Zm00001d032271_P001	Maize	extracellular	60.04	59.1
TraesCS1D01G090100.1	Wheat	extracellular	58.85	58.85
TraesCS1A01G088700.1	Wheat	extracellular	58.65	58.3
Os08t0387400-01	Rice	extracellular	59.64	58.14
TraesCS1B01G107700.1	Wheat	extracellular	58.25	57.91
HORVU1Hr1G019520.1	Barley	golgi, mitochondrion, vacuole	58.05	54.78
VIT_02s0025g02650.t01	Wine grape	endoplasmic reticulum, extracellular	48.11	49.09
VIT_13s0067g01190.t01	Wine grape	extracellular, vacuole	45.92	47.83
VIT_13s0067g01200.t01	Wine grape	extracellular, vacuole	45.13	47.29
VIT_04s0008g02020.t01	Wine grape	vacuole	45.13	46.71
VIT_18s0089g00210.t01	Wine grape	extracellular, vacuole	45.73	46.56
VIT_16s0022g00750.t01	Wine grape	extracellular, vacuole	46.12	46.49
VIT_04s0008g02010.t01	Wine grape	vacuole	45.13	46.42
VIT_07s0005g00740.t01	Wine grape	plastid	47.12	46.38
VIT_03s0038g00630.t01	Wine grape	extracellular, vacuole	44.73	45.45
VIT_19s0090g01050.t01	Wine grape	extracellular, vacuole	44.33	43.73
VIT_12s0059g01250.t01	Wine grape	extracellular, vacuole	43.54	42.03
VIT_01s0011g02170.t01	Wine grape	endoplasmic reticulum, extracellular	45.92	37.56
VIT_02s0025g01380.t01	Wine grape	extracellular, vacuole	46.12	36.88

Protein Annotations

KEGG:00500+3.2.1.4	Gene3D:1.50.10.10	EntrezGene:100255237	wikigene:100255237	MapMan:35.1	InterPro:6-hairpin_glycosidase_sf
InterPro:6hp_glycosidase-like_sf	ProteinID:CBI34394	ProteinID:CBI34394.3	UniProt:D7TV69	EMBL:FN596251	GO:GO:0000272
GO:GO:0003674	GO:GO:0003824	GO:GO:0004553	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152
GO:GO:0008810	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0016798	GO:GO:0030245
InterPro:Glyco_hydro_9	InterPro:Glyco_hydro_9_Asp/Glu_AS	InterPro:IPR012341	EntrezGene:LOC100255237	wikigene:LOC100255237	PFAM:PF00759
ScanProsite:PS00698	PANTHER:PTHR22298	PANTHER:PTHR22298:SF22	SUPFAM:SSF48208	SignalP:SignalP-noTM	UniParc:UPI00015CD25D
ArrayExpress:VIT_02s0025g00430	EnsemblPlantsGene:VIT_02s0025g00430	EnsemblPlants:VIT_02s0025g00430.t01	RefSeq:XP_002272935	RefSeq:XP_002272935.1	RefSeq:XP_010658407.1
SEG:seg	:	:	:	:	:

Description

Endoglucanase [Source:UniProtKB/TrEMBL;Acc:D7TV69]

Coordinates

chr2:-:515903..519370

Molecular Weight (calculated)

54966.4 Da

IEP (calculated)

7.038

GRAVY (calculated)

-0.297

Length

503 amino acids

Sequence
(BLAST)

001: MGYGGMVWGL VLWCVLASRN GVAMEDERLL GLGHDYGEAL GKAILFFEGQ RSGKLPSSQR VKWRGDSALS DGMPENVKLI GGYYDAGDNV KFGWPMAFSV
101: SLLSWAAVEY RREISSVKQL TYLLQAIRWG ANFILRAHTS STTLYTQVGD GNNDHQCWER PEDMDTPRTL YKINSTSPGT EAAAEAAAAL SAASIAFKGV
201: DSNYSATLLK RSKLLFEFAD KYRGSYQASC PFYCSYSGYQ DELLWAAAWL YKASGETRYL NYVSSNQGWS QAVTEFSWDN KFVGAQTLLA KEFFDGTKDL
301: GKFKTDADSF VCALMPGSSS VQIRTTPGGL LYTRDGNNLQ YVTTSSMVLL IYSKTLAAAQ IGGVQCGSAH FPTSQIRAFA KSQVDYILGN NPKKMSYMLG
401: YGSKYPTQLH HRGASIPSIH ALPDKVGCNQ GYSSWYSSTE PNPNTHVGAI VGGPNSDDQF SDVRSDYSHS EPTTYANAAF VGSVAALVHK TRAELPRADG
501: ADE

Best Arabidopsis Sequence Match ( AT4G23560.1 )
(BLAST)

001: MGKLLVLMLV GMFLAFESLE ALEYGDALNK SILFFEGQRS GKLPTNQRVK WRADSALSDG SLANVNLIGG YYDAGDNVKF VWPMSFTTTL LSWAAIEYQN
101: EISSVNQLGY LRSTIKWGTD FILRAHTSPN MLYTQVGDGN SDHSCWERPE DMDTSRTLYS ISSSSPGSEA AGEAAAALAA ASLVFKSVDS TYSSTLLNHA
201: KTLFEFADKY RGSYQASCPF YCSYSGYQDE LLWAAAWLYK ATGDKIYINY VISNKDWSQA VNEFSWDNKF VGAQALLVSE FYNGANDLAK FKSDVESFVC
301: AMMPGSSSQQ IKPTPGGLLF IRDSSNLQYV TTATTVLFHY SKTLTKAGVG SIQCGSTKFT VSQIRNFAKS QVDYILGNNP MKMSYMVGFG TKYPTQPHHR
401: GSSLPSIQSK PEKIDCNGGY SYYNSDTPNP NVHIGAIVGG PNSSDQYSDK KSDYSHAEPT TYINAAFIGP VAALISSSG

Arabidopsis Description

AtGH9B15Endoglucanase 20 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUS0]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.