Factsheet for VIT_04s0008g02010.t01

Subcellular Localization

min:

: max

Winner_takes_all: vacuole

Predictor Summary:

plastid 1
nucleus 1
mitochondrion 1
vacuole 5
plasma membrane 4
extracellular 5
endoplasmic reticulum 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	vacuole
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
EpiLoc:	nucleus
iPSORT:	mitochondrion
MultiLoc:	vacuole
Plant-mPloc:	extracellular, plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_04s0008g02020.t01	Wine grape	vacuole	75.66	76.13
Bra034983.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	61.55	68.1
Solyc06g066120.2.1	Tomato	extracellular, vacuole	67.08	67.49
CDX87948	Canola	extracellular, vacuole	66.67	67.08
CDY12319	Canola	cytosol, extracellular, vacuole	66.67	67.08
PGSC0003DMT400052749	Potato	extracellular, vacuole	66.67	67.08
AT3G43860.1	Thale cress	extracellular, vacuole	66.05	66.46
KRH52260	Soybean	extracellular, vacuole	65.64	66.46
Bra019455.1-P	Field mustard	golgi, vacuole	65.64	66.05
CDY21221	Canola	golgi, vacuole	65.44	65.84
CDY30943	Canola	golgi, vacuole	65.44	65.84
KRH52262	Soybean	extracellular, vacuole	65.03	65.84
GSMUA_Achr6P22750_001	Banana	vacuole	65.03	61.15
Os02t0778600-01	Rice	plasma membrane	61.96	60.48
EES05890	Sorghum	vacuole	60.12	59.15
TraesCS6B01G368000.1	Wheat	extracellular	59.1	57.92
TraesCS6A01G337300.1	Wheat	mitochondrion	59.3	57.2
TraesCS6D01G318100.1	Wheat	endoplasmic reticulum, extracellular, vacuole	59.3	57.09
HORVU6Hr1G081500.1	Barley	plastid	59.3	55.66
VIT_13s0067g01190.t01	Wine grape	extracellular, vacuole	45.6	46.17
VIT_13s0067g01200.t01	Wine grape	extracellular, vacuole	44.79	45.62
VIT_02s0025g00430.t01	Wine grape	extracellular, vacuole	46.42	45.13
VIT_18s0089g00210.t01	Wine grape	extracellular, vacuole	45.4	44.94
VIT_07s0005g00740.t01	Wine grape	plastid	46.42	44.42
VIT_02s0025g02650.t01	Wine grape	endoplasmic reticulum, extracellular	44.79	44.42
VIT_03s0038g00630.t01	Wine grape	extracellular, vacuole	44.79	44.24
VIT_19s0090g01050.t01	Wine grape	extracellular, vacuole	44.38	42.55
VIT_12s0059g01250.t01	Wine grape	extracellular, vacuole	45.19	42.42
VIT_16s0022g00750.t01	Wine grape	extracellular, vacuole	39.67	38.88
VIT_01s0011g02170.t01	Wine grape	endoplasmic reticulum, extracellular	45.81	36.42
VIT_02s0025g01380.t01	Wine grape	extracellular, vacuole	44.79	34.82

Protein Annotations

KEGG:00500+3.2.1.4	Gene3D:1.50.10.10	EntrezGene:100249062	wikigene:100249062	MapMan:35.1	InterPro:6-hairpin_glycosidase_sf
InterPro:6hp_glycosidase-like_sf	EMBL:AM447570	ProteinID:CAN82882	ProteinID:CAN82882.1	ProteinID:CCB46614	ProteinID:CCB46614.1
UniProt:F6H2S9	EMBL:FN595231	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553	GO:GO:0005575
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787
InterPro:Glyco_hydro_9	InterPro:IPR012341	EntrezGene:LOC100249062	wikigene:LOC100249062	PFAM:PF00759	PANTHER:PTHR22298
PANTHER:PTHR22298:SF31	SUPFAM:SSF48208	TMHMM:TMhelix	UniParc:UPI0002109A7D	ArrayExpress:VIT_04s0008g02010	EnsemblPlantsGene:VIT_04s0008g02010
EnsemblPlants:VIT_04s0008g02010.t01	RefSeq:XP_002280101	RefSeq:XP_002280101.2	RefSeq:XP_002280101.3	SEG:seg	:

Description

No Description!

Coordinates

chr4:-:1639516..1642454

Molecular Weight (calculated)

54948.1 Da

IEP (calculated)

6.239

GRAVY (calculated)

-0.239

Length

489 amino acids

Sequence
(BLAST)

001: MRMCIRRTSP PIFISYLALF SPFFIPIING GDFNYKEALT KSIIFLEAQR SGKLPPTSRL AWRGNSALDD GKLANVDLVG GYYDAGDNVK FGLPMAFTIT
101: TLSWAAIFYE AELGASEELE NVRAAIKWGT DYFLKASSQK NRLYVQVGDP VEDHECWIRP ENMETRRSVL VVDENRPGTE IAAETSAAMA SSSIVFRGSD
201: HLYSRRLLNK AKMLFQFATL FNGSYDGACP FYCSYSGYND ELLWAATWLY IATKRPKYLQ YIEEESISEN VNEFSWDLKY GGAQILLSKF YFEGEKSLEK
301: FKNQADSFVC SVLPDSPSHH IHITPGGMVH VRDGANSQYV TSTALLFSIY SDLLAQFNQN VTCNNQQFYS THLMAFAKQQ MDYLLGENPE GRSYMVGFGN
401: NPPTHAHHRG SSVPKLPENY TVNCGMSFVY WFHKNEPNPN MLTGAIVGGP DRNDTFLDLR WQSPMTEPCT YVNSLAVGVL AKLAAAHTL

Best Arabidopsis Sequence Match ( AT3G43860.1 )
(BLAST)

001: MANYKGRGNV MIRSMLLGLY GIINIVCVNG TFINYKDALT KSLIFLEAQR SGKLPPNNRV PWRGDSALDD GKLVNVDLSG GYYDAGDNVK YGLPMAFTIT
101: TLAWSTITYE KELRATGELE NARAAIRWGT DYFLKCASRK NRLYVQVGDP NADHQCWARP ENMKTPRTVL EISDKVPGTE IAAEAAAAFA ASSIVFRHVD
201: HKYARRLLNK AKLLFKLAKS HKGTYDGECP FYCSNSGYND ELIWAATWLY KATRNHLYLS YLKFEAISAY VAEFSWDLKY AGAQILITKL IFEGHKGLDL
301: YKQQADSFVC SNLPGSPYHQ VFTTPGGMIH LRDGANSQYV TATAFLFSAY ADILQKHNQK ISCGSHQFDS THLMAFAKKQ IDYILGHNPQ GRSYMVGFGP
401: NPPKQAHHRG ASVPMHEANA PLSCPLSFVK WYNKNVPNAN ELTGAILGGP DRQDKFQDLR WTSVYTEPCT YINSIAVGVL AKLAAA

Arabidopsis Description

AtGH9A4Endoglucanase 16 [Source:UniProtKB/Swiss-Prot;Acc:Q8VYG3]
SUBAcon: [extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.