Factsheet for VIT_18s0089g00210.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, vacuole

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 6
plasma membrane 5
golgi 5
plastid 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, vacuole
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY12503	Canola	extracellular, vacuole	73.08	74.74
KRH56424	Soybean	extracellular, vacuole	73.08	74.59
CDY25758	Canola	extracellular, vacuole	72.87	74.53
AT1G22880.1	Thale cress	extracellular	72.87	74.38
KRH62487	Soybean	extracellular, vacuole	72.47	73.97
Bra012349.1-P	Field mustard	extracellular, plastid, vacuole	71.86	73.5
AT1G71380.1	Thale cress	extracellular	71.86	73.35
CDX96319	Canola	extracellular, plastid, vacuole	71.26	72.73
Solyc11g040340.1.1	Tomato	extracellular, vacuole	70.45	72.65
PGSC0003DMT400021687	Potato	vacuole	70.45	72.2
CDY66787	Canola	extracellular, plastid, vacuole	70.65	72.11
Bra016143.1-P	Field mustard	extracellular, plastid, vacuole	70.65	72.11
CDY03687	Canola	extracellular	68.02	69.42
Bra007982.1-P	Field mustard	extracellular	68.02	69.42
CDY03686	Canola	extracellular	67.41	68.94
Bra007983.1-P	Field mustard	extracellular	67.0	68.53
CDY37939	Canola	extracellular, vacuole	66.8	68.32
CDY37936	Canola	extracellular	62.55	67.76
GSMUA_Achr6P07430_001	Banana	extracellular, vacuole	61.54	65.8
TraesCS6D01G089200.1	Wheat	golgi	56.28	64.35
Os04t0443300-00	Rice	vacuole	64.17	63.4
Zm00001d025475_P001	Maize	extracellular, vacuole	64.78	62.87
HORVU2Hr1G077130.1	Barley	extracellular, vacuole	63.16	62.53
TraesCS6B01G122000.1	Wheat	vacuole	51.82	62.44
TraesCS2B01G327200.1	Wheat	nucleus	64.17	62.4
TraesCS6A01G093200.1	Wheat	golgi	62.75	62.37
TraesCS2D01G308500.1	Wheat	golgi	62.75	62.25
TraesCS2A01G310200.1	Wheat	vacuole	62.96	61.58
EES12225	Sorghum	plastid	63.56	60.97
VIT_02s0025g02650.t01	Wine grape	endoplasmic reticulum, extracellular	55.87	55.98
VIT_07s0005g00740.t01	Wine grape	plastid	56.48	54.6
VIT_03s0038g00630.t01	Wine grape	extracellular, vacuole	53.64	53.54
VIT_16s0022g00750.t01	Wine grape	extracellular, vacuole	51.42	50.9
VIT_13s0067g01200.t01	Wine grape	extracellular, vacuole	45.55	46.88
VIT_13s0067g01190.t01	Wine grape	extracellular, vacuole	44.94	45.96
VIT_02s0025g00430.t01	Wine grape	extracellular, vacuole	46.56	45.73
VIT_04s0008g02010.t01	Wine grape	vacuole	44.94	45.4
VIT_04s0008g02020.t01	Wine grape	vacuole	43.32	44.03
VIT_12s0059g01250.t01	Wine grape	extracellular, vacuole	45.55	43.19
VIT_19s0090g01050.t01	Wine grape	extracellular, vacuole	44.13	42.75
VIT_02s0025g01380.t01	Wine grape	extracellular, vacuole	46.15	36.25
VIT_01s0011g02170.t01	Wine grape	endoplasmic reticulum, extracellular	43.52	34.96

Protein Annotations

KEGG:00500+3.2.1.4	Gene3D:1.50.10.10	EntrezGene:100248251	wikigene:100248251	MapMan:21.1.3.1	InterPro:6-hairpin_glycosidase_sf
InterPro:6hp_glycosidase-like_sf	EMBL:AM453246	ProteinID:CAN63305	ProteinID:CAN63305.1	ProteinID:CBI17038	ProteinID:CBI17038.3
UniProt:D7SN09	EMBL:FN594956	GO:GO:0000272	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0008810	GO:GO:0009056	GO:GO:0009987
GO:GO:0016787	GO:GO:0016798	GO:GO:0030245	InterPro:Glyco_hydro_9	InterPro:Glyco_hydro_9_Asp/Glu_AS	InterPro:Glyco_hydro_9_His_AS
InterPro:IPR012341	EntrezGene:LOC100248251	wikigene:LOC100248251	PFAM:PF00759	ScanProsite:PS00592	ScanProsite:PS00698
PFscan:PS51257	PANTHER:PTHR22298	PANTHER:PTHR22298:SF54	SUPFAM:SSF48208	SignalP:SignalP-noTM	TMHMM:TMhelix
UniParc:UPI0001BE0DBA	ArrayExpress:VIT_18s0089g00210	EnsemblPlantsGene:VIT_18s0089g00210	EnsemblPlants:VIT_18s0089g00210.t01	RefSeq:XP_002269875	RefSeq:XP_002269875.2
SEG:seg	:	:	:	:	:

Description

Endoglucanase [Source:UniProtKB/TrEMBL;Acc:D7SN09]

Coordinates

chr18:+:27952657..27956129

Molecular Weight (calculated)

54178.2 Da

IEP (calculated)

9.031

GRAVY (calculated)

-0.213

Length

494 amino acids

Sequence
(BLAST)

001: MAMRKGASSP CLLFLFFFFT LVLLGCPSLG HPNYKDALAK SILFFQGQRS GRLPTGQQMS WRSNSGLSDG SLARVDLTGG YYDAGDNVKF NFPMAFATTM
101: LSWGTLEYGK RMGPQLQNSR AAIRWATDYL IKCATTTPNT LYVGVGDPTA DHKCWERPED MDTVRTVYSV SPRNPGSDVA GETAAALAAA SMVFRKVDPK
201: YSRLLLATAK KVMQFAMQYR GAYSDSLGSA VCPFYCSYSG YKDELLWGAA WLWRATNDAS YLNFLQSLGA NDASDIFSWD NKLAGARVLL SRRALIGNDK
301: RVESFKQQAE DFMCRILPNS PSSSTSYTQG GLMFKLAESN LQYVTSITFL LSTYAKYMTA SKHTFNCGSV RVSSTTLRNL AKQQVDYILG ENPLKMSYMV
401: GFGANFPKRI HHRGASIPSK ASHPEAIGCD SGFQSFFYTS NPNPNILTGA IVGGPNQNDG FPDERTDYSH SEPATYINAA IVGPLAYLAG SYSS

Best Arabidopsis Sequence Match ( AT1G71380.1 )
(BLAST)

001: MTSLFFFVLL FSSLLISNGD ANPNYKEALS KSLLFFQGQR SGPLPRGQQI SWRASSGLSD GSAAHVDLTG GYYDAGDNVK FNLPMAFTTT MLSWSALEYG
101: KRMGPELENA RVNIRWATDY LLKCARATPG KLYVGVGDPN VDHKCWERPE DMDTPRTVYS VSASNPGSDV AAETAAALAA ASMVFRKVDS KYSRLLLATA
201: KDVMQFAIQY QGAYSDSLSS SVCPFYCSYS GYKDELMWGA SWLLRATNNP YYANFIKSLG GGDQPDIFSW DNKYAGAYVL LSRRALLNKD SNFEQYKQAA
301: ENFICKILPD SPSSSTQYTQ GGLMYKLPQS NLQYVTSITF LLTTYAKYMK ATKHTFNCGS SVIVPNALIS LSKRQVDYIL GDNPIKMSYM VGFSSNFPKR
401: IHHRASSLPS HALRSQSLGC NGGFQSFYTQ NPNPNILTGA IVGGPNQNDG YPDQRDDYSH AEPATYINAA FVGPLAYFAA GRST

Arabidopsis Description

CEL3Endoglucanase [Source:UniProtKB/TrEMBL;Acc:Q0V7W1]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.