Factsheet for VIT_04s0008g02020.t01

Subcellular Localization

min:

: max

Winner_takes_all: vacuole

Predictor Summary:

nucleus 2
extracellular 6
golgi 4
plasma membrane 5
endoplasmic reticulum 4
vacuole 6

Predictors

GFP

MS/MS

Papers

Winner Takes All:	vacuole
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	extracellular, plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_04s0008g02010.t01	Wine grape	vacuole	76.13	75.66
KRH52262	Soybean	extracellular, vacuole	73.05	73.5
KRH52260	Soybean	extracellular, vacuole	72.84	73.29
AT3G43860.1	Thale cress	extracellular, vacuole	72.22	72.22
Bra034983.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	64.61	71.04
CDX87948	Canola	extracellular, vacuole	70.58	70.58
CDY12319	Canola	cytosol, extracellular, vacuole	70.58	70.58
PGSC0003DMT400052749	Potato	extracellular, vacuole	70.58	70.58
Bra019455.1-P	Field mustard	golgi, vacuole	70.16	70.16
CDY30943	Canola	golgi, vacuole	69.96	69.96
CDY21221	Canola	golgi, vacuole	69.96	69.96
Solyc06g066120.2.1	Tomato	extracellular, vacuole	69.96	69.96
GSMUA_Achr6P22750_001	Banana	vacuole	69.34	64.81
Os02t0778600-01	Rice	plasma membrane	65.02	63.07
EES05890	Sorghum	vacuole	63.37	61.97
TraesCS6B01G368000.1	Wheat	extracellular	62.14	60.52
TraesCS6D01G318100.1	Wheat	endoplasmic reticulum, extracellular, vacuole	62.35	59.65
TraesCS6A01G337300.1	Wheat	mitochondrion	62.14	59.57
HORVU6Hr1G081500.1	Barley	plastid	62.96	58.73
VIT_13s0067g01190.t01	Wine grape	extracellular, vacuole	46.09	46.38
VIT_13s0067g01200.t01	Wine grape	extracellular, vacuole	44.86	45.42
VIT_02s0025g00430.t01	Wine grape	extracellular, vacuole	46.71	45.13
VIT_07s0005g00740.t01	Wine grape	plastid	46.5	44.23
VIT_02s0025g02650.t01	Wine grape	endoplasmic reticulum, extracellular	44.44	43.81
VIT_18s0089g00210.t01	Wine grape	extracellular, vacuole	44.03	43.32
VIT_03s0038g00630.t01	Wine grape	extracellular, vacuole	43.0	42.22
VIT_12s0059g01250.t01	Wine grape	extracellular, vacuole	45.06	42.03
VIT_19s0090g01050.t01	Wine grape	extracellular, vacuole	43.62	41.57
VIT_16s0022g00750.t01	Wine grape	extracellular, vacuole	40.12	39.08
VIT_01s0011g02170.t01	Wine grape	endoplasmic reticulum, extracellular	45.68	36.1
VIT_02s0025g01380.t01	Wine grape	extracellular, vacuole	45.68	35.29

Protein Annotations

KEGG:00500+3.2.1.4	Gene3D:1.50.10.10	EntrezGene:100243909	wikigene:100243909	MapMan:35.1	InterPro:6-hairpin_glycosidase_sf
InterPro:6hp_glycosidase-like_sf	EMBL:AM447570	ProteinID:CAN82881	ProteinID:CAN82881.1	ProteinID:CCB46615	ProteinID:CCB46615.1
UniProt:F6H2T0	EMBL:FN595231	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553	GO:GO:0005975
GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:Glyco_hydro_9	InterPro:IPR012341	EntrezGene:LOC100243909
wikigene:LOC100243909	PFAM:PF00759	PANTHER:PTHR22298	PANTHER:PTHR22298:SF31	SUPFAM:SSF48208	SignalP:SignalP-TM
UniParc:UPI00015C8F55	ArrayExpress:VIT_04s0008g02020	EnsemblPlantsGene:VIT_04s0008g02020	EnsemblPlants:VIT_04s0008g02020.t01	RefSeq:XP_002280120	RefSeq:XP_002280120.2
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr4:-:1643455..1646409

Molecular Weight (calculated)

54250.3 Da

IEP (calculated)

6.735

GRAVY (calculated)

-0.272

Length

486 amino acids

Sequence
(BLAST)

001: MGMFVRASAA IAVAWLALFE GFFGLVNGSD INYKDALTKS LIFLEAQRSG KLPANNRLPW RGDSALEDGK LVNADLVGGY YDAGDNVKYG LPMAFTVTTL
101: SWSAIFYESE LKATGELENM RDAIKWGTDY FLKAYPRKNR LYVQVGDPVQ DHQCWMRPEN METPRTVLMI DDKMPGTEIA AETSAAMASS SIVFRGVDRA
201: YARRLLNKAK LLFEFAKAHK GTYDGECPFY CSFSGYNDEL LWAATWLYIA TRKPKYLKYI QEESISASVA EFSWDLKYAG AQILLSKFYF EGEKGLETFK
301: NQADSFICSV LPDSPYHQIY LTPGGMVHLR DGANTQYVTG TAHLFAVYSN ILAQFNQKVV CGGQQFDHTH LMAFAKQQMD YLLGKNPEGR SYMVGFGNNP
401: PTQAHHRGAS VPKLPQGSTV SCAMSFVYWF NKNDANPNEL TGAILGGPDR NDNFDDKRWD SSKTEPCTYV NSLAVGVLSH LAMHNA

Best Arabidopsis Sequence Match ( AT3G43860.1 )
(BLAST)

001: MANYKGRGNV MIRSMLLGLY GIINIVCVNG TFINYKDALT KSLIFLEAQR SGKLPPNNRV PWRGDSALDD GKLVNVDLSG GYYDAGDNVK YGLPMAFTIT
101: TLAWSTITYE KELRATGELE NARAAIRWGT DYFLKCASRK NRLYVQVGDP NADHQCWARP ENMKTPRTVL EISDKVPGTE IAAEAAAAFA ASSIVFRHVD
201: HKYARRLLNK AKLLFKLAKS HKGTYDGECP FYCSNSGYND ELIWAATWLY KATRNHLYLS YLKFEAISAY VAEFSWDLKY AGAQILITKL IFEGHKGLDL
301: YKQQADSFVC SNLPGSPYHQ VFTTPGGMIH LRDGANSQYV TATAFLFSAY ADILQKHNQK ISCGSHQFDS THLMAFAKKQ IDYILGHNPQ GRSYMVGFGP
401: NPPKQAHHRG ASVPMHEANA PLSCPLSFVK WYNKNVPNAN ELTGAILGGP DRQDKFQDLR WTSVYTEPCT YINSIAVGVL AKLAAA

Arabidopsis Description

AtGH9A4Endoglucanase 16 [Source:UniProtKB/Swiss-Prot;Acc:Q8VYG3]
SUBAcon: [extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.