Factsheet for PGSC0003DMT400052749

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, vacuole

Predictor Summary:

nucleus 3
extracellular 6
endoplasmic reticulum 4
vacuole 5
plasma membrane 5
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, vacuole
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	extracellular, plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g066120.2.1	Tomato	extracellular, vacuole	97.12	97.12
VIT_04s0008g02020.t01	Wine grape	vacuole	70.58	70.58
VIT_04s0008g02010.t01	Wine grape	vacuole	67.08	66.67
Bra019455.1-P	Field mustard	golgi, vacuole	64.81	64.81
CDY30943	Canola	golgi, vacuole	64.81	64.81
CDY21221	Canola	golgi, vacuole	64.81	64.81
KRH52262	Soybean	extracellular, vacuole	64.4	64.8
AT3G43860.1	Thale cress	extracellular, vacuole	64.61	64.61
KRH52260	Soybean	extracellular, vacuole	63.99	64.39
Bra034983.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	58.44	64.25
CDY12319	Canola	cytosol, extracellular, vacuole	63.99	63.99
CDX87948	Canola	extracellular, vacuole	63.99	63.99
GSMUA_Achr6P22750_001	Banana	vacuole	66.46	62.12
Os02t0778600-01	Rice	plasma membrane	61.73	59.88
EES05890	Sorghum	vacuole	60.29	58.95
TraesCS6B01G368000.1	Wheat	extracellular	60.29	58.72
TraesCS6A01G337300.1	Wheat	mitochondrion	60.08	57.59
TraesCS6D01G318100.1	Wheat	endoplasmic reticulum, extracellular, vacuole	60.08	57.48
HORVU6Hr1G081500.1	Barley	plastid	60.08	56.05
PGSC0003DMT400023082	Potato	extracellular, vacuole	46.71	46.42
PGSC0003DMT400031897	Potato	endoplasmic reticulum, extracellular	46.91	45.78
PGSC0003DMT400069884	Potato	extracellular, vacuole	44.86	45.51
PGSC0003DMT400001781	Potato	extracellular, vacuole	46.3	44.73
PGSC0003DMT400081314	Potato	extracellular	45.88	44.6
PGSC0003DMT400031762	Potato	extracellular	45.88	44.42
PGSC0003DMT400021687	Potato	vacuole	43.83	44.19
PGSC0003DMT400008105	Potato	endoplasmic reticulum, extracellular, vacuole	43.21	42.42
PGSC0003DMT400057164	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	36.42	41.75
PGSC0003DMT400072087	Potato	golgi, vacuole	35.6	40.23
PGSC0003DMT400012809	Potato	extracellular, vacuole	39.92	35.93
PGSC0003DMT400032028	Potato	endoplasmic reticulum, extracellular, vacuole	46.09	35.84
PGSC0003DMT400051238	Potato	extracellular	45.06	34.65

Protein Annotations

KEGG:00500+3.2.1.4	Gene3D:1.50.10.10	EntrezGene:102589466	MapMan:35.1	InterPro:6-hairpin_glycosidase_sf	InterPro:6hp_glycosidase-like_sf
GO:GO:0003674	GO:GO:0003824	GO:GO:0004553	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152
GO:GO:0016787	InterPro:Glyco_hydro_9	InterPro:IPR012341	UniProt:M1BTX6	PFAM:PF00759	EnsemblPlantsGene:PGSC0003DMG401020473
PGSC:PGSC0003DMG401020473	EnsemblPlants:PGSC0003DMT400052749	PANTHER:PTHR22298	PANTHER:PTHR22298:SF31	SUPFAM:SSF48208	UniParc:UPI0002948775
RefSeq:XP_006353696.2	SEG:seg	:	:	:	:

Description

Endo-1,4-beta-glucanase [Source:PGSC_GENE;Acc:PGSC0003DMG401020473]

Coordinates

chr6:-:45628948..45631863

Molecular Weight (calculated)

54264.0 Da

IEP (calculated)

8.712

GRAVY (calculated)

-0.441

Length

486 amino acids

Sequence
(BLAST)

001: MNNKISILKA FRTFVVAWFI IFEGVHGDFN YQDALTKSLI FLEAQRSGKL PPKHRPSWRG DSALQDGKSA NVDLVGGYYD AGDNVKYGLP MAFTVTTLAW
101: AAIAYHSQLQ SAGELENVRS AIKWGTDYFL KASVKRNCLY VQVGDPVKDH ECWTRPENMK TPRTVLMIDQ KNPGTEIAAE TSAAMAAASI VFRGTDRSYS
201: RKLLNKAKQL FQFGKTHKGT YDGECPFYCS FSGYHDELLW AATWLYRATK RPTYLEFITE EATTATVAEF SWDLKYAGAQ ILLSKFYFEG EKDLANFKQQ
301: ADGFICSNHP QSPHHQVHMS PGGLIHLRDG ANSQYVTGAA FLFSAYSDYL AMYKQTVSCG DKKFNSADLM DFAKQQMDYL LGKNPRGKSY MVGFGNKPPT
401: QAHHRGASVP QMSPNKLVDC SMSFVNWYNT EKPNSNELTG AIVGGPDKND NFEDRRSSSS MTEPTTYTNS LAVGVLAKLT KHHSSS

Best Arabidopsis Sequence Match ( AT3G43860.1 )
(BLAST)

001: MANYKGRGNV MIRSMLLGLY GIINIVCVNG TFINYKDALT KSLIFLEAQR SGKLPPNNRV PWRGDSALDD GKLVNVDLSG GYYDAGDNVK YGLPMAFTIT
101: TLAWSTITYE KELRATGELE NARAAIRWGT DYFLKCASRK NRLYVQVGDP NADHQCWARP ENMKTPRTVL EISDKVPGTE IAAEAAAAFA ASSIVFRHVD
201: HKYARRLLNK AKLLFKLAKS HKGTYDGECP FYCSNSGYND ELIWAATWLY KATRNHLYLS YLKFEAISAY VAEFSWDLKY AGAQILITKL IFEGHKGLDL
301: YKQQADSFVC SNLPGSPYHQ VFTTPGGMIH LRDGANSQYV TATAFLFSAY ADILQKHNQK ISCGSHQFDS THLMAFAKKQ IDYILGHNPQ GRSYMVGFGP
401: NPPKQAHHRG ASVPMHEANA PLSCPLSFVK WYNKNVPNAN ELTGAILGGP DRQDKFQDLR WTSVYTEPCT YINSIAVGVL AKLAAA

Arabidopsis Description

AtGH9A4Endoglucanase 16 [Source:UniProtKB/Swiss-Prot;Acc:Q8VYG3]
SUBAcon: [extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.