Factsheet for PGSC0003DMT400008105

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular, vacuole

Predictor Summary:

extracellular 7
endoplasmic reticulum 6
vacuole 6
plasma membrane 6
golgi 5
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular, vacuole
Any Predictor:	nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	extracellular, plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g110340.2.1	Tomato	extracellular, vacuole	96.16	95.97
KRH60771	Soybean	extracellular, vacuole	75.35	75.97
VIT_03s0038g00630.t01	Wine grape	extracellular, vacuole	74.95	74.95
KRH51463	Soybean	extracellular	74.75	74.9
KRH29353	Soybean	extracellular, vacuole	74.95	73.9
CDY42599	Canola	cytosol	68.89	71.79
Bra011881.1-P	Field mustard	cytosol	68.89	71.79
CDY41955	Canola	extracellular, vacuole	69.7	69.7
AT4G39010.1	Thale cress	extracellular, vacuole	69.09	68.81
GSMUA_Achr1P07760_001	Banana	vacuole	67.68	66.87
GSMUA_Achr2P03400_001	Banana	extracellular	66.26	65.73
GSMUA_Achr9P20920_001	Banana	extracellular, vacuole	57.78	65.0
TraesCS5A01G317400.1	Wheat	plastid	64.24	62.35
TraesCS5B01G318000.1	Wheat	vacuole	64.44	62.18
HORVU5Hr1G081200.5	Barley	vacuole	64.65	62.14
Os09t0530200-01	Rice	mitochondrion	63.84	61.36
Zm00001d021280_P004	Maize	vacuole	65.66	59.09
TraesCS5D01G323700.2	Wheat	vacuole	64.65	58.18
OQU89810	Sorghum	extracellular, plastid, vacuole	65.66	58.14
PGSC0003DMT400023082	Potato	extracellular, vacuole	57.17	57.87
CDY22400	Canola	extracellular, vacuole	54.14	57.63
CDY41954	Canola	vacuole	53.94	57.17
CDY22399	Canola	extracellular	56.77	57.11
Bra033592.1-P	Field mustard	extracellular	56.77	57.11
AT4G39000.1	Thale cress	extracellular, vacuole	56.57	56.8
Bra011882.1-P	Field mustard	extracellular	56.36	56.71
Bra033591.1-P	Field mustard	extracellular, vacuole	55.76	56.33
CDY42597	Canola	extracellular	53.13	56.32
CDX72723	Canola	extracellular	55.96	56.3
PGSC0003DMT400031897	Potato	endoplasmic reticulum, extracellular	55.76	55.42
PGSC0003DMT400081314	Potato	extracellular	53.74	53.2
PGSC0003DMT400021687	Potato	vacuole	51.52	52.9
PGSC0003DMT400072087	Potato	golgi, vacuole	43.43	50.0
PGSC0003DMT400069884	Potato	extracellular, vacuole	46.26	47.81
PGSC0003DMT400031762	Potato	extracellular	46.87	46.22
PGSC0003DMT400052749	Potato	extracellular, vacuole	42.42	43.21
PGSC0003DMT400001781	Potato	extracellular, vacuole	43.43	42.74
PGSC0003DMT400057164	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	34.95	40.8
PGSC0003DMT400032028	Potato	endoplasmic reticulum, extracellular, vacuole	45.45	36.0
PGSC0003DMT400012809	Potato	extracellular, vacuole	38.38	35.19
PGSC0003DMT400051238	Potato	extracellular	42.63	33.39

Protein Annotations

KEGG:00500+3.2.1.4	Gene3D:1.50.10.10	EntrezGene:102579821	MapMan:35.1	InterPro:6-hairpin_glycosidase_sf	InterPro:6hp_glycosidase-like_sf
GO:GO:0000272	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0008810	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0016798
GO:GO:0030245	InterPro:Glyco_hydro_9	InterPro:Glyco_hydro_9_Asp/Glu_AS	InterPro:IPR012341	UniProt:M0ZU30	PFAM:PF00759
EnsemblPlantsGene:PGSC0003DMG400003124	PGSC:PGSC0003DMG400003124	EnsemblPlants:PGSC0003DMT400008105	ScanProsite:PS00698	PANTHER:PTHR22298	PANTHER:PTHR22298:SF29
SUPFAM:SSF48208	SignalP:SignalP-noTM	UniParc:UPI0002948A43	RefSeq:XP_006362003.1	SEG:seg	:

Description

Endo-1,4-beta-glucanase [Source:PGSC_GENE;Acc:PGSC0003DMG400003124]

Coordinates

chr1:+:86651856..86657814

Molecular Weight (calculated)

54928.4 Da

IEP (calculated)

4.693

GRAVY (calculated)

-0.297

Length

495 amino acids

Sequence
(BLAST)

001: MKNKIISSKL MLLLLLLPLI NCHGSYLDYT DALTKSILFF EGQRSGYLPQ DQRMNWRGHS GLSDGWTVNV DLTGGYYDAG DNVKFNFPMA FTTTLLAWSV
101: IEFGEIMPPA ELRNALVAIR WSTDYLLKTV SQPDRIFVQV GDPVLDHNCW ERPEDMDTAR TVYTVDAPNP ASDVAGETAA ALAAASIAFR PSDPGYAETL
201: LRTSTRVFDF ADKNRGAYSD NLNIRDGVCP YYCDFDGYQD ELLWGAAWLR RATQGDNYLS YIQENRQTLG ADDNIDEFGW ENKHAGLNVL VSKEVLDGTT
301: YSLQSYKSSA DSFMCTLIPE SSSSHIQYSP GGLIYKPGGS NLQHATTITF LLLVYANYLE KSSQILNCGT ISVSPSMLRK IGKRQVDYIL GENPKGISYM
401: VGYSNYYPQK IHHRGSTIPS INDHPQVIGC NEGSIYFNSS QPNPNVLVGA IVGGPGEDDV YDDNRDEFRK SEPTTYINAP FVGALAYFAA NPNVN

Best Arabidopsis Sequence Match ( AT4G39010.1 )
(BLAST)

001: MKLHLHPLSL VFFFFFFFFR PTMSSNQHDY SDALSKSILF FEGQRSGYLP NDQRMTWRRN SGLSDGWTHN IDLTGGYYDA GDNVKFNFPM AFTTTMLAWS
101: VIEFGEFMPS SELRNSLVAL RWSSNYLLKS VSQLPNRIFV QVGDPIADHN CWERPEDMDT PRTAYAVNAP NPASEVAGET TAALSAASIA FRSSDPGYSQ
201: TLLQNAVKTF QFADMYRGAY SSNDDIKNDV CPFYCDFNGF QDELLWGAAW LRKATGDESY LNYIESNREP FGANDNVDEF GWDNKVGGLN VLVSKEVIEG
301: NMYNLEAYKA SAESFMCSLV PESSGPHVEY TSAGLLYKPG GSQLQHATTI SFLLLVYAQY LSRSSLSLNC GTLTVPPDYL RRLAKKQVDY ILGNNPMGLS
401: YMVGYGERYP KRIHHRGSSL PSIVDHPEAI RCKDGSVYFN STEPNPNVLI GAVVGGPGED DMYDDDRSDF RKSEPTTYIN APFVGVLAYF AANPGSS

Arabidopsis Description

AtGH9B18Endoglucanase 24 [Source:UniProtKB/Swiss-Prot;Acc:Q93YQ7]
SUBAcon: [extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.