Factsheet for TraesCS5A01G317400.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 5
endoplasmic reticulum 4
vacuole 6
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

plastid: 22160430

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G318000.1	Wheat	vacuole	97.45	96.88
HORVU5Hr1G081200.5	Barley	vacuole	96.86	95.92
TraesCS5D01G323700.2	Wheat	vacuole	98.82	91.64
Os09t0530200-01	Rice	mitochondrion	79.61	78.83
OQU89810	Sorghum	extracellular, plastid, vacuole	86.27	78.71
Zm00001d021280_P004	Maize	vacuole	84.71	78.55
GSMUA_Achr1P07760_001	Banana	vacuole	72.94	74.25
GSMUA_Achr9P20920_001	Banana	extracellular, vacuole	62.75	72.73
GSMUA_Achr2P03400_001	Banana	extracellular	70.98	72.55
VIT_03s0038g00630.t01	Wine grape	extracellular, vacuole	68.43	70.51
KRH60771	Soybean	extracellular, vacuole	66.08	68.64
KRH51463	Soybean	extracellular	65.69	67.81
KRH29353	Soybean	extracellular, vacuole	65.1	66.14
Solyc01g110340.2.1	Tomato	extracellular, vacuole	62.55	64.31
PGSC0003DMT400008105	Potato	endoplasmic reticulum, extracellular, vacuole	62.35	64.24
Bra011881.1-P	Field mustard	cytosol	59.41	63.79
CDY42599	Canola	cytosol	59.02	63.37
CDY41955	Canola	extracellular, vacuole	60.0	61.82
AT4G39010.1	Thale cress	extracellular, vacuole	60.2	61.77
TraesCS6A01G295300.1	Wheat	extracellular	57.65	59.27
TraesCS7A01G204500.1	Wheat	extracellular	57.45	58.25
TraesCS7A01G317700.1	Wheat	extracellular	52.94	54.66
CDY22399	Canola	extracellular	51.96	53.86
Bra033592.1-P	Field mustard	extracellular	51.96	53.86
TraesCS1A01G360700.3	Wheat	extracellular, vacuole	55.49	53.7
CDX72723	Canola	extracellular	51.57	53.46
TraesCS5A01G172100.1	Wheat	extracellular, vacuole	51.96	53.11
AT4G39000.1	Thale cress	extracellular, vacuole	51.18	52.94
TraesCS6A01G093200.1	Wheat	golgi	51.18	52.52
CDY22400	Canola	extracellular, vacuole	47.84	52.47
CDY41954	Canola	vacuole	48.04	52.46
Bra033591.1-P	Field mustard	extracellular, vacuole	50.2	52.24
Bra011882.1-P	Field mustard	extracellular	50.39	52.24
CDY42597	Canola	extracellular	47.45	51.82
TraesCS5A01G172200.1	Wheat	endoplasmic reticulum, extracellular, vacuole	51.76	49.81
TraesCS2A01G310200.1	Wheat	vacuole	48.63	49.11
TraesCS1A01G072100.1	Wheat	nucleus	45.29	47.14
TraesCS1A01G072300.1	Wheat	vacuole	45.1	46.56
TraesCS1A01G088700.1	Wheat	extracellular	44.9	45.26
TraesCS7A01G144500.1	Wheat	endoplasmic reticulum, extracellular, vacuole	42.94	42.52
TraesCS6A01G337300.1	Wheat	mitochondrion	41.76	42.01
TraesCS7A01G144700.1	Wheat	vacuole	42.55	41.89
TraesCS6A01G312400.1	Wheat	vacuole	43.73	41.37
TraesCS5A01G202600.1	Wheat	vacuole	42.75	40.67
TraesCS7A01G144400.1	Wheat	cytosol, vacuole	33.33	40.67
TraesCS6A01G122100.1	Wheat	endoplasmic reticulum, extracellular, vacuole	42.16	40.64
TraesCS7A01G197900.1	Wheat	extracellular, vacuole	43.33	37.91
TraesCS1A01G389300.1	Wheat	extracellular, vacuole	45.88	37.68
TraesCS3A01G144600.1	Wheat	extracellular, vacuole	45.88	37.14
TraesCS2A01G556300.1	Wheat	vacuole	44.71	35.35

Protein Annotations

KEGG:00500+3.2.1.4	Gene3D:1.50.10.10	MapMan:35.1	InterPro:6-hairpin_glycosidase_sf	InterPro:6hp_glycosidase-like_sf	GO:GO:0003674
GO:GO:0003824	GO:GO:0004553	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787
InterPro:Glyco_hydro_9	InterPro:Glyco_hydro_9_Asp/Glu_AS	InterPro:Glyco_hydro_9_His_AS	InterPro:IPR012341	PFAM:PF00759	ScanProsite:PS00592
ScanProsite:PS00698	PANTHER:PTHR22298	PANTHER:PTHR22298:SF29	SUPFAM:SSF48208	SignalP:SignalP-noTM	EnsemblPlantsGene:TraesCS5A01G317400
EnsemblPlants:TraesCS5A01G317400.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr5A:+:528285417..528287979

Molecular Weight (calculated)

56166.7 Da

IEP (calculated)

5.338

GRAVY (calculated)

-0.465

Length

510 amino acids

Sequence
(BLAST)

001: MASVPAHHLR VRVLLVALCA VSASASASWP WKRGGHDYRD ALAKCILFFE GQRSGRLPEG QRAAWRGDSG VSDGRAAGAG VDLEGGYYDA GDNVKFGFPM
101: AFTTTMLSWS VLEFGDDMPR EERRHAADAV RWGTDYLLKT LAHPGVIFMQ VGDPWKDHEC WERPEDMDTE RTVYNVSAGR PGSEVAGETA AALAAASMVF
201: RDGDREYAEL LLDSAKKAFE FADSHRGAYS DDMDLRAGGC PFYCDFNGYQ DELLWGAAWL RRASGDDTFR EYIQNNGKTL GAEDSINEFG WDNKHAGLNV
301: LISKEFIEGE ALSMQSYKES ADSFICTLIP ESSSPHIQYT PGGMIYKPGG SNMQHVTSIS FLLLTYAKYL TKSSHTVNCG DISVGPDTLR LQAKKQIDYL
401: LGDNPMKMSY MVGYGDRYPQ RIHHRGSSLP SIKDHPERMA CKDGTPYYDS SSPNPNPLVG AIVGGPGEDD AYGDDRADYR KSEPTTYINA PLVGVLAYFV
501: GNPNPGRIRH

Best Arabidopsis Sequence Match ( AT4G39010.1 )
(BLAST)

001: MKLHLHPLSL VFFFFFFFFR PTMSSNQHDY SDALSKSILF FEGQRSGYLP NDQRMTWRRN SGLSDGWTHN IDLTGGYYDA GDNVKFNFPM AFTTTMLAWS
101: VIEFGEFMPS SELRNSLVAL RWSSNYLLKS VSQLPNRIFV QVGDPIADHN CWERPEDMDT PRTAYAVNAP NPASEVAGET TAALSAASIA FRSSDPGYSQ
201: TLLQNAVKTF QFADMYRGAY SSNDDIKNDV CPFYCDFNGF QDELLWGAAW LRKATGDESY LNYIESNREP FGANDNVDEF GWDNKVGGLN VLVSKEVIEG
301: NMYNLEAYKA SAESFMCSLV PESSGPHVEY TSAGLLYKPG GSQLQHATTI SFLLLVYAQY LSRSSLSLNC GTLTVPPDYL RRLAKKQVDY ILGNNPMGLS
401: YMVGYGERYP KRIHHRGSSL PSIVDHPEAI RCKDGSVYFN STEPNPNVLI GAVVGGPGED DMYDDDRSDF RKSEPTTYIN APFVGVLAYF AANPGSS

Arabidopsis Description

AtGH9B18Endoglucanase 24 [Source:UniProtKB/Swiss-Prot;Acc:Q93YQ7]
SUBAcon: [extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.