Factsheet for TraesCS6A01G312400.1

Subcellular Localization

min:

: max

Winner_takes_all: vacuole

Predictor Summary:

extracellular 5
golgi 4
plasma membrane 4
endoplasmic reticulum 4
vacuole 6

Predictors

GFP

MS/MS

Papers

Winner Takes All:	vacuole
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G291800.1	Wheat	vacuole	95.73	94.85
TraesCS6B01G342600.1	Wheat	vacuole	93.69	94.75
Os02t0738600-01	Rice	mitochondrion	85.71	83.54
Zm00001d017978_P001	Maize	plasma membrane	83.49	82.87
Zm00001d051814_P002	Maize	vacuole	80.89	81.95
TraesCS7A01G197900.1	Wheat	extracellular, vacuole	78.11	72.21
TraesCS7A01G144400.1	Wheat	cytosol, vacuole	55.29	71.29
TraesCS7A01G144700.1	Wheat	vacuole	66.79	69.5
TraesCS7A01G144500.1	Wheat	endoplasmic reticulum, extracellular, vacuole	66.23	69.32
PGSC0003DMT400001781	Potato	extracellular, vacuole	60.85	65.21
Solyc07g049300.2.1	Tomato	extracellular, vacuole	60.85	65.21
VIT_12s0059g01250.t01	Wine grape	extracellular, vacuole	62.15	64.3
TraesCS5A01G202600.1	Wheat	vacuole	63.82	64.18
TraesCS6A01G122100.1	Wheat	endoplasmic reticulum, extracellular, vacuole	62.71	63.89
Bra005536.1-P	Field mustard	vacuole	61.78	63.79
CDY17123	Canola	vacuole	61.78	63.79
CDY19428	Canola	vacuole	61.78	63.79
CDY19174	Canola	vacuole	61.6	63.0
GSMUA_Achr7P02160_001	Banana	vacuole	59.55	62.94
AT2G32990.1	Thale cress	extracellular, vacuole	61.22	62.86
KRH14764	Soybean	cytosol, nucleus, vacuole	47.31	62.81
CDY23776	Canola	vacuole	60.67	62.17
GSMUA_Achr8P22580_001	Banana	endoplasmic reticulum, golgi, mitochondrion, vacuole	58.44	61.76
Bra021821.1-P	Field mustard	vacuole	58.26	61.69
KRH73374	Soybean	vacuole	59.93	61.64
EES07289	Sorghum	mitochondrion	83.49	59.37
TraesCS1A01G072100.1	Wheat	nucleus	44.16	48.57
TraesCS1A01G072300.1	Wheat	vacuole	44.34	48.38
TraesCS5A01G172100.1	Wheat	extracellular, vacuole	44.53	48.1
TraesCS3A01G144600.1	Wheat	extracellular, vacuole	56.03	47.94
TraesCS7A01G317700.1	Wheat	extracellular	43.78	47.77
TraesCS1A01G389300.1	Wheat	extracellular, vacuole	54.17	47.02
TraesCS6A01G295300.1	Wheat	extracellular	41.74	45.36
TraesCS5A01G172200.1	Wheat	endoplasmic reticulum, extracellular, vacuole	44.53	45.28
TraesCS1A01G360700.3	Wheat	extracellular, vacuole	43.97	44.97
TraesCS7A01G204500.1	Wheat	extracellular	41.93	44.93
TraesCS1A01G088700.1	Wheat	extracellular	41.56	44.27
TraesCS5A01G317400.1	Wheat	plastid	41.37	43.73
TraesCS6A01G093200.1	Wheat	golgi	39.89	43.26
TraesCS2A01G310200.1	Wheat	vacuole	39.52	42.18
TraesCS2A01G556300.1	Wheat	vacuole	50.09	41.86
TraesCS6A01G337300.1	Wheat	mitochondrion	38.96	41.42

Protein Annotations

KEGG:00500+3.2.1.4	Gene3D:1.50.10.10	MapMan:35.1	InterPro:6-hairpin_glycosidase_sf	InterPro:6hp_glycosidase-like_sf	GO:GO:0003674
GO:GO:0003824	GO:GO:0004553	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787
InterPro:Glyco_hydro_9	InterPro:Glyco_hydro_9_His_AS	InterPro:IPR012341	PFAM:PF00759	ScanProsite:PS00592	PANTHER:PTHR22298
PANTHER:PTHR22298:SF52	SUPFAM:SSF48208	SignalP:SignalP-noTM	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS6A01G312400	EnsemblPlants:TraesCS6A01G312400.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr6A:-:549042679..549045631

Molecular Weight (calculated)

59161.2 Da

IEP (calculated)

6.593

GRAVY (calculated)

-0.382

Length

539 amino acids

Sequence
(BLAST)

001: MRSGSTPWLR AALLLVLAVL LAAVAAAEGS KSGSGDGKAH NYEEALRKSL LYFEAQRSGR LPHGQRVPWR DHSGLTDGLE QGVDLVGGYY DAGDHVKFGL
101: PMAFTVTMLS WSMLEYGDDV AAAGELAHAL EAIKWGTDYF IKAHTQPDEL WAEVGDGDTD HYCWQRPEDM TTSRQAYKVD RDHPGSDVAG ETAAAMAAAS
201: MVFRKSNPHY AHLLLHHAQQ LFEFADGYRG QYDSSIAEVK SYYASVSGYK DELLWAALWL HRATGKAAYL DYVVDNAHDF GGTGWAITEF SWDVKYAGVQ
301: ILAARLLLRG EHTAEQKSTL ERYQAKAEHY VCACLGRNAQ AGGEDANVER SPGGMLYIRQ WNNMQYVTNA AFLLSTYADY LAEAGVGTVT CAGGGTAGAG
401: EVAALARAQT DYVLGTNPRG VSYLVGYGPK YPARVHHRAA SIVPYKHSKQ FIGCSQGFDH WFGRRSSNPN VLVGAIVGGP DRRDRFRDNR DNYMQTEACT
501: YNTAPMVGMF AKLNRMAREE REEREQRAAT ARSGTAAEV

Best Arabidopsis Sequence Match ( AT1G64390.1 )
(BLAST)

001: MEKFAPVAAL LLLLLCFPVA FSGHDYGQAL SKSLLFFEAQ RSGVLPRNQR VTWRSHSGLT DGKSSGVNLV GGYYDAGDNV KFGLPMAFTV TMMAWSVIEY
101: GNQLQANGEL GNSIDAIKWG TDYFIKAHPE PNVLYGEVGD GNTDHYCWQR PEEMTTDRKA YRIDPSNPGS DLAGETAAAM AAASIVFRRS NPVYSRLLLT
201: HAYQLFDFAD KYRGKYDSSI TVAQKYYRSV SGYNDELLWA AAWLYQASNN QFYLDYLGRN GDAMGGTGWS MTEFGWDVKY AGVQTLVAKF LMQGKAGRHA
301: PVFRKYQEKA DSFMCSLLGK SSRNIQKTPG GLIFRQRWNN MQFVTSASFL TTVYSDYLTS SRSNLRCAAG NVAPSQLLSF AKSQVDYILG DNPRATSYMV
401: GYGNNFPQRV HHRGSSIVSV KVDRTFVTCR GGYATWFSRK GSDPNLLTGA IVGGPDAYDN FADRRDNYEQ TEPATYNNAP LLGVLARLSS GHSGYSQFLP
501: VVPAPVVRRP MPIRRPKVTT PVRASGPVAI VQKITSSWVS KGRTYYRYST TVINKSSRPL KSLNLSIKNL YGPIWGLSRS GNSFGLPSWM HSLPSGKSLE
601: FVYIHSTTPA NVAVSSYTLA

Arabidopsis Description

AtGH9C2Endoglucanase 6 [Source:UniProtKB/Swiss-Prot;Acc:Q42059]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.