Factsheet for TraesCS1A01G389300.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, vacuole

Predictor Summary:

extracellular 5
endoplasmic reticulum 4
vacuole 5
plasma membrane 4
golgi 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, vacuole
Any Predictor:	plastid, secretory
iPSORT:	secretory
MultiLoc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G397400.1	Wheat	extracellular, vacuole	97.75	97.9
TraesCS4B01G104500.1	Wheat	extracellular, vacuole	97.26	97.42
HORVU1Hr1G085830.2	Barley	vacuole	94.2	93.75
EES19222	Sorghum	vacuole	85.67	84.85
Zm00001d010446_P001	Maize	vacuole	83.74	83.47
Os05t0212300-01	Rice	extracellular, vacuole	84.54	83.47
TraesCS3A01G144600.1	Wheat	extracellular, vacuole	65.38	64.44
GSMUA_Achr4P08520_001	Banana	endoplasmic reticulum, extracellular, vacuole	60.06	63.76
VIT_02s0025g01380.t01	Wine grape	extracellular, vacuole	62.64	61.84
PGSC0003DMT400032028	Potato	endoplasmic reticulum, extracellular, vacuole	62.0	61.6
PGSC0003DMT400012809	Potato	extracellular, vacuole	53.46	61.48
KRH60035	Soybean	nucleus	61.67	61.38
Solyc08g082250.2.1	Tomato	extracellular	61.67	61.28
KRH41305	Soybean	nucleus	61.67	61.28
CDY47849	Canola	extracellular, vacuole	60.23	60.32
CDY34422	Canola	endoplasmic reticulum, extracellular, vacuole	60.06	60.16
Bra027699.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	59.9	59.9
CDY46529	Canola	extracellular, vacuole	59.9	59.9
Bra027735.1-P	Field mustard	extracellular, vacuole	59.74	59.84
CDX90780	Canola	endoplasmic reticulum, extracellular	58.78	58.31
CDY05130	Canola	extracellular, vacuole	58.45	57.99
AT4G11050.1	Thale cress	vacuole	58.29	57.83
TraesCS7A01G144700.1	Wheat	vacuole	46.22	55.41
TraesCS7A01G144400.1	Wheat	cytosol, vacuole	37.2	55.26
Solyc12g055970.1.1	Tomato	cytosol, nucleus	40.9	54.98
TraesCS7A01G144500.1	Wheat	endoplasmic reticulum, extracellular, vacuole	45.57	54.95
TraesCS6A01G122100.1	Wheat	endoplasmic reticulum, extracellular, vacuole	46.22	54.25
TraesCS6A01G312400.1	Wheat	vacuole	47.02	54.17
CDY08373	Canola	cytosol, extracellular, mitochondrion, nucleus	36.23	53.32
TraesCS5A01G202600.1	Wheat	vacuole	45.09	52.24
TraesCS1A01G072100.1	Wheat	nucleus	40.42	51.22
TraesCS7A01G197900.1	Wheat	extracellular, vacuole	47.18	50.26
TraesCS1A01G072300.1	Wheat	vacuole	39.94	50.2
TraesCS5A01G172100.1	Wheat	extracellular, vacuole	38.49	47.9
TraesCS7A01G317700.1	Wheat	extracellular	37.2	46.76
TraesCS7A01G204500.1	Wheat	extracellular	37.84	46.72
TraesCS6A01G295300.1	Wheat	extracellular	37.2	46.57
TraesCS5A01G172200.1	Wheat	endoplasmic reticulum, extracellular, vacuole	39.29	46.04
TraesCS1A01G360700.3	Wheat	extracellular, vacuole	38.97	45.92
TraesCS5A01G317400.1	Wheat	plastid	37.68	45.88
TraesCS6A01G093200.1	Wheat	golgi	36.39	45.47
TraesCS2A01G556300.1	Wheat	vacuole	46.86	45.12
TraesCS2A01G310200.1	Wheat	vacuole	35.43	43.56
TraesCS1A01G088700.1	Wheat	extracellular	35.43	43.48
TraesCS6A01G337300.1	Wheat	mitochondrion	33.49	41.03

Protein Annotations

KEGG:00500+3.2.1.4	Gene3D:1.50.10.10	MapMan:35.1	InterPro:6-hairpin_glycosidase_sf	InterPro:6hp_glycosidase-like_sf	InterPro:CBM_49
GO:GO:0003674	GO:GO:0003824	GO:GO:0004553	GO:GO:0005488	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0016787	GO:GO:0030246	InterPro:Glyco_hydro_9	InterPro:Glyco_hydro_9_His_AS	InterPro:IPR012341
PFAM:PF00759	PFAM:PF09478	ScanProsite:PS00592	PANTHER:PTHR22298	PANTHER:PTHR22298:SF46	SMART:SM01063
SUPFAM:SSF48208	SignalP:SignalP-noTM	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS1A01G389300	EnsemblPlants:TraesCS1A01G389300.1	SEG:seg

Description

No Description!

Coordinates

chr1A:+:557423813..557426533

Molecular Weight (calculated)

68595.8 Da

IEP (calculated)

8.601

GRAVY (calculated)

-0.325

Length

621 amino acids

Sequence
(BLAST)

001: MARNSSGAHV AAAIFGLMVV ASMASLASGH DYAMALKKSL LYFEAQRSGA LPPDQRVTWR ASSGLFDGKA NGVDLVGGYY DAGDNVKFGL PMAFTVTMMS
101: WSILEYGKQM AASGELKNAM DAVKWGTDYF IKAHPEPDVL YGEVGDGDTD HTCWQRPEDM TTSRQAFRVD PQNPGSDLAG ETAAAMAAAS MVFRTTYPGY
201: ANLLLEHSKQ LFEFADKYRG KYDASITVAR NYYGSFSGYG DELLWAAAWL FEATEEPFYL EYLARNGDAL GGTGWSINQF GWDVKYPGVQ VLAAKFLLQG
301: RAGEHAEALQ RYRQNAEFFV CSCVGKGAVN VPRTPGGVMY HQRWNNLQFV TSASFLLTVY ADYATVTGRG AVRCPAGAAQ PFEILAFVKS QVNYILGDNP
401: RATSYMVGYG QNYPRQVHHR GASIVSVRTD PSFVSCQEGY ASWYNKQAVN PNTLDGAIVG GPDEYDDFAD ERNNYEQTEA ATYNSAPLLG VLARLAGACG
501: GLDEYQSLPQ VAAANRTSRP AHRRHPHLEI EQNVTRTWAI RRRTYHRYSV TVTNRSRKTV RGLHLGVSEL DGRLWGLDKA RYGYVVPRRW LRALRPGRSV
601: RFGYVQPGPP ANVWVTGYKL V

Best Arabidopsis Sequence Match ( AT1G64390.1 )
(BLAST)

001: MEKFAPVAAL LLLLLCFPVA FSGHDYGQAL SKSLLFFEAQ RSGVLPRNQR VTWRSHSGLT DGKSSGVNLV GGYYDAGDNV KFGLPMAFTV TMMAWSVIEY
101: GNQLQANGEL GNSIDAIKWG TDYFIKAHPE PNVLYGEVGD GNTDHYCWQR PEEMTTDRKA YRIDPSNPGS DLAGETAAAM AAASIVFRRS NPVYSRLLLT
201: HAYQLFDFAD KYRGKYDSSI TVAQKYYRSV SGYNDELLWA AAWLYQASNN QFYLDYLGRN GDAMGGTGWS MTEFGWDVKY AGVQTLVAKF LMQGKAGRHA
301: PVFRKYQEKA DSFMCSLLGK SSRNIQKTPG GLIFRQRWNN MQFVTSASFL TTVYSDYLTS SRSNLRCAAG NVAPSQLLSF AKSQVDYILG DNPRATSYMV
401: GYGNNFPQRV HHRGSSIVSV KVDRTFVTCR GGYATWFSRK GSDPNLLTGA IVGGPDAYDN FADRRDNYEQ TEPATYNNAP LLGVLARLSS GHSGYSQFLP
501: VVPAPVVRRP MPIRRPKVTT PVRASGPVAI VQKITSSWVS KGRTYYRYST TVINKSSRPL KSLNLSIKNL YGPIWGLSRS GNSFGLPSWM HSLPSGKSLE
601: FVYIHSTTPA NVAVSSYTLA

Arabidopsis Description

AtGH9C2Endoglucanase 6 [Source:UniProtKB/Swiss-Prot;Acc:Q42059]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.