Factsheet for GSMUA_Achr4P08520_001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular, vacuole

Predictor Summary:

nucleus 2
plastid 1
vacuole 4
plasma membrane 4
extracellular 5
endoplasmic reticulum 4
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular, vacuole
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	vacuole
Plant-mPloc:	extracellular, plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400032028	Potato	endoplasmic reticulum, extracellular, vacuole	73.68	68.96
Solyc08g082250.2.1	Tomato	extracellular	73.5	68.8
KRH60035	Soybean	nucleus	72.82	68.27
VIT_02s0025g01380.t01	Wine grape	extracellular, vacuole	73.33	68.2
KRH41305	Soybean	nucleus	72.82	68.16
PGSC0003DMT400012809	Potato	extracellular, vacuole	61.37	66.48
CDY34422	Canola	endoplasmic reticulum, extracellular, vacuole	69.57	65.65
CDY47849	Canola	extracellular, vacuole	69.57	65.65
Bra027699.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	69.57	65.54
Bra027735.1-P	Field mustard	extracellular, vacuole	69.23	65.32
CDY46529	Canola	extracellular, vacuole	68.89	64.9
CDY08373	Canola	cytosol, extracellular, mitochondrion, nucleus	45.81	63.51
AT4G11050.1	Thale cress	vacuole	67.69	63.26
Solyc12g055970.1.1	Tomato	cytosol, nucleus	49.91	63.2
CDX90780	Canola	endoplasmic reticulum, extracellular	67.35	62.94
CDY05130	Canola	extracellular, vacuole	67.18	62.78
Os05t0212300-01	Rice	extracellular, vacuole	65.13	60.57
TraesCS4B01G104500.1	Wheat	extracellular, vacuole	64.1	60.48
Os01t0220100-01	Rice	extracellular, vacuole	66.15	60.47
TraesCS1D01G397400.1	Wheat	extracellular, vacuole	63.93	60.32
TraesCS1A01G389300.1	Wheat	extracellular, vacuole	63.76	60.06
HORVU1Hr1G085830.2	Barley	vacuole	63.25	59.29
Zm00001d010446_P001	Maize	vacuole	62.91	59.07
EES19222	Sorghum	vacuole	63.08	58.85
HORVU3Hr1G029470.2	Barley	endoplasmic reticulum, extracellular, vacuole	62.39	58.59
Zm00001d008952_P001	Maize	extracellular	63.93	57.98
Os01t0219600-00	Rice	mitochondrion	62.91	57.5
EES00050	Sorghum	extracellular, mitochondrion, plastid, vacuole	64.27	57.49
TraesCS3A01G144600.1	Wheat	extracellular, vacuole	60.85	56.51
GSMUA_Achr3P28200_001	Banana	endoplasmic reticulum, golgi, vacuole	43.25	55.12
TraesCS3D01G153400.1	Wheat	extracellular, mitochondrion, plastid, vacuole	60.85	54.52
GSMUA_Achr2P05330_001	Banana	vacuole	44.44	54.17
GSMUA_Achr8P22580_001	Banana	endoplasmic reticulum, golgi, mitochondrion, vacuole	44.44	50.98
GSMUA_Achr7P02160_001	Banana	vacuole	44.27	50.78
GSMUA_Achr8P25280_001	Banana	endoplasmic reticulum, extracellular, vacuole	41.2	50.21
GSMUA_Achr6P15630_001	Banana	extracellular, vacuole	37.78	49.22
KXG31545	Sorghum	cytosol	45.3	48.71
GSMUA_Achr5P05960_001	Banana	extracellular, vacuole	39.66	46.49
GSMUA_Achr11P...	Banana	extracellular, vacuole	40.0	46.25
GSMUA_Achr2P03770_001	Banana	vacuole	48.03	46.14
GSMUA_Achr1P08170_001	Banana	endoplasmic reticulum, extracellular, vacuole	33.5	43.75
GSMUA_Achr8P12170_001	Banana	endoplasmic reticulum, extracellular, vacuole	33.5	43.36
GSMUA_Achr9P20920_001	Banana	extracellular, vacuole	32.48	43.18
GSMUA_Achr1P07760_001	Banana	vacuole	36.92	43.11
GSMUA_Achr6P07430_001	Banana	extracellular, vacuole	33.33	42.21
GSMUA_Achr2P03400_001	Banana	extracellular	35.38	41.48
GSMUA_Achr6P22750_001	Banana	vacuole	35.9	40.38
GSMUA_Achr11P...	Banana	cytosol	33.5	40.0
GSMUA_Achr11P...	Banana	vacuole	33.5	39.2
GSMUA_Achr4P12980_001	Banana	extracellular, vacuole	43.25	31.04

Protein Annotations

KEGG:00500+3.2.1.4	Gene3D:1.50.10.10	MapMan:35.1	InterPro:6-hairpin_glycosidase_sf	InterPro:6hp_glycosidase-like_sf	InterPro:CBM_49
GO:GO:0000272	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553	GO:GO:0005488	GO:GO:0005975
GO:GO:0008150	GO:GO:0008152	GO:GO:0008810	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787
GO:GO:0016798	GO:GO:0030245	GO:GO:0030246	EnsemblPlantsGene:GSMUA_Achr4G08520_001	EnsemblPlants:GSMUA_Achr4P08520_001	EnsemblPlants:GSMUA_Achr4T08520_001
InterPro:Glyco_hydro_9	InterPro:Glyco_hydro_9_Asp/Glu_AS	InterPro:IPR012341	UniProt:M0SM69	PFAM:PF00759	PFAM:PF09478
ScanProsite:PS00698	PANTHER:PTHR22298	PANTHER:PTHR22298:SF46	SMART:SM01063	SUPFAM:SSF48208	SignalP:SignalP-noTM
UniParc:UPI0002956871	SEG:seg	:	:	:	:

Description

Endoglucanase 6 [Source:GMGC_GENE;Acc:GSMUA_Achr4G08520_001]

Coordinates

chr4:+:6259489..6262542

Molecular Weight (calculated)

64428.3 Da

IEP (calculated)

7.414

GRAVY (calculated)

-0.179

Length

585 amino acids

Sequence
(BLAST)

001: MAGLIVVLLG MAMPLASAEH DYGKALSKSI LFFEAQRSGQ LCGYYDAGDN VKFGLPMAFT ITMMSWSIVE YGKQMAASGE LGHAMEAVKW GTDYLIKAHS
101: EPFVLYGEVG DGNTDHFCWQ RPEDMTTSRL AYRIDVNHPG SDLAGETAAA MAAASMVFRH SNPAYSCQLL SHAKQLFEFA DKYRGKYDSS ITVARRYYRS
201: YSGYGDELLW AAAWLYHATH NRCYMDYLAN NGGSLGGTGW AVTEFGWDVK YAGVQVLAAK FLLQGKEAQH APVLGKYQQK AEYFLCSCLG KGAHNVQRTT
301: GGLLFRQRWN NMQFVTNAAF LLTIYSDYIA SAGRNVACAA GTASPAELLL FAKSQVDYIL GDNPRGTSYM VGYGKSYPRQ VHHRASSIVS IKADPSFVSC
401: REGYDTWYSR KAQDPNILDG AIVGGPDVYD DFADERDNYE QTEPTTYNNA PMLGVLARLH AGHSGYNQLL PVVLSIPGVP VKNKDVTALS PPFTIEQKAT
501: TSWESKGRIY YRYSTVVTNK SSKIAKELVI SISKLYGPVW GLGKSGNDYT FPAWLDSLPA GKSFEFVYIH SASPADIIVS GYTFV

Best Arabidopsis Sequence Match ( AT1G64390.1 )
(BLAST)

001: MEKFAPVAAL LLLLLCFPVA FSGHDYGQAL SKSLLFFEAQ RSGVLPRNQR VTWRSHSGLT DGKSSGVNLV GGYYDAGDNV KFGLPMAFTV TMMAWSVIEY
101: GNQLQANGEL GNSIDAIKWG TDYFIKAHPE PNVLYGEVGD GNTDHYCWQR PEEMTTDRKA YRIDPSNPGS DLAGETAAAM AAASIVFRRS NPVYSRLLLT
201: HAYQLFDFAD KYRGKYDSSI TVAQKYYRSV SGYNDELLWA AAWLYQASNN QFYLDYLGRN GDAMGGTGWS MTEFGWDVKY AGVQTLVAKF LMQGKAGRHA
301: PVFRKYQEKA DSFMCSLLGK SSRNIQKTPG GLIFRQRWNN MQFVTSASFL TTVYSDYLTS SRSNLRCAAG NVAPSQLLSF AKSQVDYILG DNPRATSYMV
401: GYGNNFPQRV HHRGSSIVSV KVDRTFVTCR GGYATWFSRK GSDPNLLTGA IVGGPDAYDN FADRRDNYEQ TEPATYNNAP LLGVLARLSS GHSGYSQFLP
501: VVPAPVVRRP MPIRRPKVTT PVRASGPVAI VQKITSSWVS KGRTYYRYST TVINKSSRPL KSLNLSIKNL YGPIWGLSRS GNSFGLPSWM HSLPSGKSLE
601: FVYIHSTTPA NVAVSSYTLA

Arabidopsis Description

AtGH9C2Endoglucanase 6 [Source:UniProtKB/Swiss-Prot;Acc:Q42059]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.