CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, extracellular, vacuole

Predictor Summary:

nucleus 2
mitochondrion 2
vacuole 2
plasma membrane 2
extracellular 3
endoplasmic reticulum 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, mitochondrion, plastid, vacuole
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	mitochondrion
MultiLoc:	vacuole
Plant-mPloc:	extracellular, plasma membrane
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d008952_P001	Maize	extracellular	88.69	89.92
KXG31545	Sorghum	cytosol	66.82	80.33
Os01t0220100-01	Rice	extracellular, vacuole	74.62	76.25
HORVU3Hr1G029470.2	Barley	endoplasmic reticulum, extracellular, vacuole	68.96	72.39
Os01t0219600-00	Rice	mitochondrion	70.49	72.03
TraesCS3A01G144600.1	Wheat	extracellular, vacuole	68.35	70.95
TraesCS3D01G153400.1	Wheat	extracellular, mitochondrion, plastid, vacuole	68.5	68.61
EES19222	Sorghum	vacuole	65.6	68.42
GSMUA_Achr4P08520_001	Banana	endoplasmic reticulum, extracellular, vacuole	57.49	64.27
PGSC0003DMT400032028	Potato	endoplasmic reticulum, extracellular, vacuole	59.94	62.72
Solyc08g082250.2.1	Tomato	extracellular	59.79	62.56
KRH60035	Soybean	nucleus	59.63	62.5
KRH41305	Soybean	nucleus	59.63	62.4
VIT_02s0025g01380.t01	Wine grape	extracellular, vacuole	59.17	61.53
PGSC0003DMT400012809	Potato	extracellular, vacuole	50.31	60.93
CDY47849	Canola	extracellular, vacuole	56.57	59.68
AT4G11050.1	Thale cress	vacuole	57.03	59.58
CDY34422	Canola	endoplasmic reticulum, extracellular, vacuole	56.42	59.52
CDY05130	Canola	extracellular, vacuole	56.88	59.42
CDX90780	Canola	endoplasmic reticulum, extracellular	56.88	59.42
CDY46529	Canola	extracellular, vacuole	56.42	59.42
Bra027699.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	56.27	59.26
Bra027735.1-P	Field mustard	extracellular, vacuole	56.12	59.19
EES15002	Sorghum	endoplasmic reticulum, extracellular	44.19	57.11
EER98860	Sorghum	golgi, mitochondrion, vacuole	46.02	55.54
Solyc12g055970.1.1	Tomato	cytosol, nucleus	38.84	54.98
OQU76161	Sorghum	vacuole	37.0	54.88
EES06282	Sorghum	extracellular, vacuole	43.43	53.08
CDY08373	Canola	cytosol, extracellular, mitochondrion, nucleus	33.64	52.13
EES00659	Sorghum	vacuole	39.76	51.9
KXG21209	Sorghum	cytosol	29.82	50.13
EES04405	Sorghum	plasma membrane, vacuole	38.69	49.22
EES13091	Sorghum	vacuole	46.18	47.94
EES07307	Sorghum	vacuole	36.85	47.82
EES13257	Sorghum	extracellular	36.7	47.81
EES05890	Sorghum	vacuole	34.86	45.88
EES13778	Sorghum	extracellular	35.93	45.45
EES12225	Sorghum	plastid	34.4	43.69
OQU89810	Sorghum	extracellular, plastid, vacuole	36.39	42.58
EER89549	Sorghum	mitochondrion	36.54	42.53
EES07289	Sorghum	mitochondrion	47.09	40.63

Protein Annotations

KEGG:00500+3.2.1.4	Gene3D:1.50.10.10	MapMan:35.1	InterPro:6-hairpin_glycosidase_sf	InterPro:6hp_glycosidase-like_sf	EntrezGene:8081389
UniProt:C5XKE9	InterPro:CBM_49	EnsemblPlants:EES00050	ProteinID:EES00050	ProteinID:EES00050.1	GO:GO:0000272
GO:GO:0003674	GO:GO:0003824	GO:GO:0004553	GO:GO:0005488	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0008810	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0016798
GO:GO:0030245	GO:GO:0030246	InterPro:Glyco_hydro_9	InterPro:Glyco_hydro_9_Asp/Glu_AS	InterPro:IPR012341	PFAM:PF00759
PFAM:PF09478	ScanProsite:PS00698	PANTHER:PTHR22298	PANTHER:PTHR22298:SF46	MetaCyc:PWY-6788	SMART:SM01063
EnsemblPlantsGene:SORBI_3003G015700	SUPFAM:SSF48208	unigene:Sbi.2739	TMHMM:TMhelix	UniParc:UPI0001A84A4B	RefSeq:XP_002454930.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:1426081..1429733

Molecular Weight (calculated)

69788.6 Da

IEP (calculated)

7.971

GRAVY (calculated)

-0.272

Length

654 amino acids

Sequence
(BLAST)

001: MARGGGRGGG GSRGAVVDSM AVVLIGLAMA LAAATTQVAS AAGHDYRQAL SKSILYFEAQ RSGRLPGSQR VSWRADSGLR DGKANGVDLV GGYYDAGDNV
101: KFGLPMAFTV TMMSWSVLEY GKQMAAAGEL GHAVEAIKWG TDYLVKAHPE PNVLYGEVGD GDSDHDCWMR PEDMTTSRQA YRLDPQNPGS ELAGETAAAM
201: AAASLVFRSS NPGYGNTLLQ HSKQLFDFAD KYRGRYDSSI TVARKYYASS SGYGDELLWA AAWLHEATGE SRYLDYLATN ADALGGTGWS INQFGWDVKY
301: PGVQVLAAMF LLRRGGNAGA HADVLRRYKQ KADLFACSCL GRGGANSVRR TPGGMVYHQS WNNVQFVTSA AFLLAAYADH LAAAGQAAQC PSAGGSSAQP
401: SELLAFARSQ VDYILGSNPR ATSYMVGYGA TYPRQAHHRG ASIVSVKANP SFVSCQAGYS SWYHRRSANP NLLDGATVGG PDEYDNFADE RDNYEQTEAT
501: TYNNAPLMGV LARLAAGHGG GRFGHHSVAA DLPAEASSST AINRTSLPSP TPAAPEHASP IEIEQNATAS WTERGKTYHR YAVTVTNRSL IKTVHELHIG
601: ISKLYGQVWG VDKARYGYVL PSGLPSLPAG KSASFVYVQA APPADVWVTG YKLL

Best Arabidopsis Sequence Match ( AT4G11050.1 )
(BLAST)

001: MGSRTTISIL VVLLLGLVQL AISGHDYKQA LSKSILFFEA QRSGHLPPNQ RVSWRSHSGL YDGKSSGVDL VGGYYDAGDN VKFGLPMAFT VTTMCWSIIE
101: YGGQLESNGE LGHAIDAVKW GTDYFIKAHP EPNVLYGEVG DGKSDHYCWQ RPEEMTTDRR AYKIDRNNPG SDLAGETAAA MAAASIVFRR SDPSYSAELL
201: RHAHQLFEFA DKYRGKYDSS ITVAQKYYRS VSGYNDELLW AAAWLYQATN DKYYLDYLGK NGDSMGGTGW SMTEFGWDVK YAGVQTLVAK VLMQGKGGEH
301: TAVFERYQQK AEQFMCSLLG KSTKNIKKTP GGLIFRQSWN NMQFVTSASF LATVYSDYLS YSKRDLLCSQ GNISPSQLLE FSKSQVDYIL GDNPRATSYM
401: VGYGENYPRQ VHHRGSSIVS FNVDQKFVTC RGGYATWFSR KGSDPNVLTG ALVGGPDAYD NFADQRDNYE QTEPATYNNA PLLGVLARLI SGSTGFDQLL
501: PGVSPTPSPV IIKPAPVPQR KPTKPPAASS PSPITISQKM TNSWKNEGKV YYRYSTILTN RSTKTLKILK ISITKLYGPI WGVTKTGNSF SFPSWMQSLP
601: SGKSMEFVYI HSASPADVLV SNYSLE

Arabidopsis Description

AtGH9C3Endoglucanase 19 [Source:UniProtKB/Swiss-Prot;Acc:Q8L7I0]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.