Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 7
- endoplasmic reticulum 6
- vacuole 6
- plasma membrane 6
- golgi 5
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc08g082250.2.1 | Tomato | extracellular | 98.24 | 98.24 |
| PGSC0003DMT400012809 | Potato | extracellular, vacuole | 70.56 | 81.67 |
| KRH60035 | Soybean | nucleus | 76.64 | 76.76 |
| KRH41305 | Soybean | nucleus | 76.64 | 76.64 |
| VIT_02s0025g01380.t01 | Wine grape | extracellular, vacuole | 76.8 | 76.31 |
| CDY47849 | Canola | extracellular, vacuole | 73.28 | 73.87 |
| CDY46529 | Canola | extracellular, vacuole | 73.28 | 73.75 |
| CDY34422 | Canola | endoplasmic reticulum, extracellular, vacuole | 73.12 | 73.71 |
| GSMUA_Achr4P08520_001 | Banana | endoplasmic reticulum, extracellular, vacuole | 68.96 | 73.68 |
| Bra027699.1-P | Field mustard | endoplasmic reticulum, extracellular, vacuole | 73.12 | 73.59 |
| Bra027735.1-P | Field mustard | extracellular, vacuole | 72.8 | 73.39 |
| AT4G11050.1 | Thale cress | vacuole | 71.68 | 71.57 |
| CDY08373 | Canola | cytosol, extracellular, mitochondrion, nucleus | 48.32 | 71.56 |
| CDX90780 | Canola | endoplasmic reticulum, extracellular | 71.36 | 71.25 |
| CDY05130 | Canola | extracellular, vacuole | 70.56 | 70.45 |
| TraesCS1D01G397400.1 | Wheat | extracellular, vacuole | 61.76 | 62.26 |
| TraesCS4B01G104500.1 | Wheat | extracellular, vacuole | 61.6 | 62.1 |
| TraesCS1A01G389300.1 | Wheat | extracellular, vacuole | 61.6 | 62.0 |
| HORVU1Hr1G085830.2 | Barley | vacuole | 61.6 | 61.7 |
| Os01t0220100-01 | Rice | extracellular, vacuole | 62.88 | 61.41 |
| Os05t0212300-01 | Rice | extracellular, vacuole | 61.76 | 61.37 |
| EES19222 | Sorghum | vacuole | 61.44 | 61.24 |
| Zm00001d010446_P001 | Maize | vacuole | 60.96 | 61.16 |
| HORVU3Hr1G029470.2 | Barley | endoplasmic reticulum, extracellular, vacuole | 60.64 | 60.83 |
| Zm00001d008952_P001 | Maize | extracellular | 62.08 | 60.16 |
| EES00050 | Sorghum | extracellular, mitochondrion, plastid, vacuole | 62.72 | 59.94 |
| Os01t0219600-00 | Rice | mitochondrion | 60.8 | 59.38 |
| TraesCS3A01G144600.1 | Wheat | extracellular, vacuole | 59.84 | 59.37 |
| TraesCS3D01G153400.1 | Wheat | extracellular, mitochondrion, plastid, vacuole | 60.0 | 57.43 |
| PGSC0003DMT400001781 | Potato | extracellular, vacuole | 46.08 | 57.26 |
| PGSC0003DMT400057164 | Potato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 38.4 | 56.6 |
| PGSC0003DMT400069884 | Potato | extracellular, vacuole | 42.24 | 55.11 |
| PGSC0003DMT400081314 | Potato | extracellular | 39.52 | 49.4 |
| PGSC0003DMT400051238 | Potato | extracellular | 49.92 | 49.37 |
| KXG31545 | Sorghum | cytosol | 42.72 | 49.08 |
| PGSC0003DMT400023082 | Potato | extracellular, vacuole | 37.76 | 48.26 |
| PGSC0003DMT400021687 | Potato | vacuole | 36.96 | 47.93 |
| PGSC0003DMT400031897 | Potato | endoplasmic reticulum, extracellular | 37.44 | 46.99 |
| PGSC0003DMT400052749 | Potato | extracellular, vacuole | 35.84 | 46.09 |
| PGSC0003DMT400008105 | Potato | endoplasmic reticulum, extracellular, vacuole | 36.0 | 45.45 |
| PGSC0003DMT400031762 | Potato | extracellular | 35.84 | 44.62 |
| PGSC0003DMT400072087 | Potato | golgi, vacuole | 30.08 | 43.72 |
Protein Annotations
| KEGG:00500+3.2.1.4 | Gene3D:1.50.10.10 | EntrezGene:102589512 | MapMan:35.1 | InterPro:6-hairpin_glycosidase_sf | InterPro:6hp_glycosidase-like_sf |
| InterPro:CBM_49 | GO:GO:0000272 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004553 | GO:GO:0005488 |
| GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008810 | GO:GO:0009056 | GO:GO:0009987 |
| GO:GO:0016787 | GO:GO:0016798 | GO:GO:0030245 | GO:GO:0030246 | InterPro:Glyco_hydro_9 | InterPro:Glyco_hydro_9_Asp/Glu_AS |
| InterPro:Glyco_hydro_9_His_AS | InterPro:IPR012341 | UniProt:M1AWP9 | PFAM:PF00759 | PFAM:PF09478 | EnsemblPlantsGene:PGSC0003DMG400012288 |
| PGSC:PGSC0003DMG400012288 | EnsemblPlants:PGSC0003DMT400032028 | ScanProsite:PS00592 | ScanProsite:PS00698 | PANTHER:PTHR22298 | PANTHER:PTHR22298:SF19 |
| SMART:SM01063 | SUPFAM:SSF48208 | SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI000296BB6A | RefSeq:XP_006343864.1 |
| SEG:seg | : | : | : | : | : |
Description
Endo-beta-1,4-D-glucanase [Source:PGSC_GENE;Acc:PGSC0003DMG400012288]
Coordinates
chr8:+:55853163..55858801
Molecular Weight (calculated)
68835.3 Da
IEP (calculated)
9.460
GRAVY (calculated)
-0.303
Length
625 amino acids
Sequence
(BLAST)
(BLAST)
001: MKGFVGSLVF LIILVVPVAL AGHNYGEALS KSFLFYEAQR SGYLPHNQRV QWRGNSGLND GKASGIDLVG GYYDAGDNVK FGLPMAFTVT MLSWSILEYG
101: RQMAASGELS HAMDAVKWGT DYLLKAHPEP YVLYGEVGDG NTDHYCWQRP EDMTTSRAAY RIDPNHPGSD LAGETAAAMA AASIVFRRYN PGYANELLNH
201: AHQLFEFADK YRGKYDSSIS VAQKYYRSVS GYADELLWGA AWLYKASNNQ FYLNYLGRNG DALGGTGWSM TEFGWDVKYA GVQTLVAQFL MSGKAGHNAP
301: VFEKYQQKAE NFMCSCLGKG DRNTQRTPGG LIYRQRWNNM QFVTSAAFLA TTYSDYLASA GKYLKCSSGS VSPNELLSFA KSQVDYILGD NPRATSYMVG
401: YGNNYPRQVH HRASSIVSFK VNPSFVSCRG GYATWYSRKA SDPNLLTGAL VGGPDAYDNF ADQRDNYEQT EPATYNNAPL IGVLARLHAG HSGYNQLLPV
501: VPDPKPTPKP APRTKVTPAP RQRVLPVPAN AHVTIQQKAT SSWALNGKTY YRYSAVVTNK SGKTVKNLKL SIVKLYGPLW GLTKYGNSFI FPAWLNSLPA
601: GKSLEFVYIH TASPAIVSVS SYTLV
101: RQMAASGELS HAMDAVKWGT DYLLKAHPEP YVLYGEVGDG NTDHYCWQRP EDMTTSRAAY RIDPNHPGSD LAGETAAAMA AASIVFRRYN PGYANELLNH
201: AHQLFEFADK YRGKYDSSIS VAQKYYRSVS GYADELLWGA AWLYKASNNQ FYLNYLGRNG DALGGTGWSM TEFGWDVKYA GVQTLVAQFL MSGKAGHNAP
301: VFEKYQQKAE NFMCSCLGKG DRNTQRTPGG LIYRQRWNNM QFVTSAAFLA TTYSDYLASA GKYLKCSSGS VSPNELLSFA KSQVDYILGD NPRATSYMVG
401: YGNNYPRQVH HRASSIVSFK VNPSFVSCRG GYATWYSRKA SDPNLLTGAL VGGPDAYDNF ADQRDNYEQT EPATYNNAPL IGVLARLHAG HSGYNQLLPV
501: VPDPKPTPKP APRTKVTPAP RQRVLPVPAN AHVTIQQKAT SSWALNGKTY YRYSAVVTNK SGKTVKNLKL SIVKLYGPLW GLTKYGNSFI FPAWLNSLPA
601: GKSLEFVYIH TASPAIVSVS SYTLV
001: MEKFAPVAAL LLLLLCFPVA FSGHDYGQAL SKSLLFFEAQ RSGVLPRNQR VTWRSHSGLT DGKSSGVNLV GGYYDAGDNV KFGLPMAFTV TMMAWSVIEY
101: GNQLQANGEL GNSIDAIKWG TDYFIKAHPE PNVLYGEVGD GNTDHYCWQR PEEMTTDRKA YRIDPSNPGS DLAGETAAAM AAASIVFRRS NPVYSRLLLT
201: HAYQLFDFAD KYRGKYDSSI TVAQKYYRSV SGYNDELLWA AAWLYQASNN QFYLDYLGRN GDAMGGTGWS MTEFGWDVKY AGVQTLVAKF LMQGKAGRHA
301: PVFRKYQEKA DSFMCSLLGK SSRNIQKTPG GLIFRQRWNN MQFVTSASFL TTVYSDYLTS SRSNLRCAAG NVAPSQLLSF AKSQVDYILG DNPRATSYMV
401: GYGNNFPQRV HHRGSSIVSV KVDRTFVTCR GGYATWFSRK GSDPNLLTGA IVGGPDAYDN FADRRDNYEQ TEPATYNNAP LLGVLARLSS GHSGYSQFLP
501: VVPAPVVRRP MPIRRPKVTT PVRASGPVAI VQKITSSWVS KGRTYYRYST TVINKSSRPL KSLNLSIKNL YGPIWGLSRS GNSFGLPSWM HSLPSGKSLE
601: FVYIHSTTPA NVAVSSYTLA
101: GNQLQANGEL GNSIDAIKWG TDYFIKAHPE PNVLYGEVGD GNTDHYCWQR PEEMTTDRKA YRIDPSNPGS DLAGETAAAM AAASIVFRRS NPVYSRLLLT
201: HAYQLFDFAD KYRGKYDSSI TVAQKYYRSV SGYNDELLWA AAWLYQASNN QFYLDYLGRN GDAMGGTGWS MTEFGWDVKY AGVQTLVAKF LMQGKAGRHA
301: PVFRKYQEKA DSFMCSLLGK SSRNIQKTPG GLIFRQRWNN MQFVTSASFL TTVYSDYLTS SRSNLRCAAG NVAPSQLLSF AKSQVDYILG DNPRATSYMV
401: GYGNNFPQRV HHRGSSIVSV KVDRTFVTCR GGYATWFSRK GSDPNLLTGA IVGGPDAYDN FADRRDNYEQ TEPATYNNAP LLGVLARLSS GHSGYSQFLP
501: VVPAPVVRRP MPIRRPKVTT PVRASGPVAI VQKITSSWVS KGRTYYRYST TVINKSSRPL KSLNLSIKNL YGPIWGLSRS GNSFGLPSWM HSLPSGKSLE
601: FVYIHSTTPA NVAVSSYTLA
Arabidopsis Description
AtGH9C2Endoglucanase 6 [Source:UniProtKB/Swiss-Prot;Acc:Q42059]
SUBAcon: [vacuole]
SUBAcon: [vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.