Factsheet for TraesCS4B01G104500.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, vacuole

Predictor Summary:

extracellular 5
endoplasmic reticulum 4
vacuole 5
plasma membrane 4
golgi 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, vacuole
Any Predictor:	plastid, secretory
iPSORT:	secretory
MultiLoc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G397400.1	Wheat	extracellular, vacuole	97.42	97.42
TraesCS1A01G389300.1	Wheat	extracellular, vacuole	97.42	97.26
HORVU1Hr1G085830.2	Barley	vacuole	95.16	94.55
EES19222	Sorghum	vacuole	85.48	84.53
Os05t0212300-01	Rice	extracellular, vacuole	84.84	83.62
Zm00001d010446_P001	Maize	vacuole	83.87	83.47
GSMUA_Achr4P08520_001	Banana	endoplasmic reticulum, extracellular, vacuole	60.48	64.1
PGSC0003DMT400032028	Potato	endoplasmic reticulum, extracellular, vacuole	62.1	61.6
KRH60035	Soybean	nucleus	61.94	61.54
PGSC0003DMT400012809	Potato	extracellular, vacuole	53.55	61.48
KRH41305	Soybean	nucleus	61.94	61.44
VIT_02s0025g01380.t01	Wine grape	extracellular, vacuole	62.26	61.37
Solyc08g082250.2.1	Tomato	extracellular	61.77	61.28
CDY47849	Canola	extracellular, vacuole	60.48	60.48
CDY34422	Canola	endoplasmic reticulum, extracellular, vacuole	60.32	60.32
Bra027699.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	60.16	60.06
CDY46529	Canola	extracellular, vacuole	60.16	60.06
Bra027735.1-P	Field mustard	extracellular, vacuole	60.0	60.0
CDX90780	Canola	endoplasmic reticulum, extracellular	58.71	58.15
CDY05130	Canola	extracellular, vacuole	58.55	57.99
AT4G11050.1	Thale cress	vacuole	58.23	57.67
TraesCS7B01G104600.1	Wheat	vacuole	47.74	55.53
TraesCS6B01G342600.1	Wheat	vacuole	47.58	55.35
TraesCS7B01G046900.1	Wheat	vacuole	46.13	55.21
Solyc12g055970.1.1	Tomato	cytosol, nucleus	40.65	54.55
TraesCS6B01G150300.1	Wheat	endoplasmic reticulum, extracellular, vacuole	46.45	54.44
TraesCS7B01G047000.1	Wheat	extracellular, vacuole	45.16	54.37
CDY08373	Canola	cytosol, extracellular, mitochondrion, nucleus	35.65	52.37
TraesCS5B01G201100.1	Wheat	vacuole	45.32	52.13
TraesCS1B01G090700.1	Wheat	extracellular, vacuole	40.0	50.61
TraesCS1B01G377100.1	Wheat	extracellular, vacuole	38.87	48.49
TraesCS5B01G169600.1	Wheat	endoplasmic reticulum, extracellular, vacuole	38.71	48.29
TraesCS2B01G586600.1	Wheat	extracellular	47.42	47.88
TraesCS6B01G325400.1	Wheat	extracellular	37.9	47.38
TraesCS5B01G169500.1	Wheat	unclear	37.9	47.09
TraesCS7B01G219100.1	Wheat	extracellular	37.26	46.76
TraesCS5B01G318000.1	Wheat	vacuole	38.23	46.2
TraesCS7B01G111700.1	Wheat	extracellular	38.55	45.27
TraesCS6B01G122000.1	Wheat	vacuole	29.03	43.9
TraesCS2B01G327200.1	Wheat	nucleus	35.97	43.9
TraesCS1B01G107700.1	Wheat	extracellular	35.0	42.89
TraesCS6B01G368000.1	Wheat	extracellular	33.87	42.08

Protein Annotations

KEGG:00500+3.2.1.4	Gene3D:1.50.10.10	MapMan:35.1	InterPro:6-hairpin_glycosidase_sf	InterPro:6hp_glycosidase-like_sf	InterPro:CBM_49
GO:GO:0003674	GO:GO:0003824	GO:GO:0004553	GO:GO:0005488	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0016787	GO:GO:0030246	InterPro:Glyco_hydro_9	InterPro:Glyco_hydro_9_His_AS	InterPro:IPR012341
PFAM:PF00759	PFAM:PF09478	ScanProsite:PS00592	PANTHER:PTHR22298	PANTHER:PTHR22298:SF46	SUPFAM:SSF48208
SignalP:SignalP-noTM	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS4B01G104500	EnsemblPlants:TraesCS4B01G104500.1	SEG:seg	:

Description

No Description!

Coordinates

chr4B:+:111779170..111781785

Molecular Weight (calculated)

68561.9 Da

IEP (calculated)

9.162

GRAVY (calculated)

-0.329

Length

620 amino acids

Sequence
(BLAST)

001: MARNSSAAHA VAAAIFGLLA LASMAKLASG HDYAMALKKS LLYFEAQRSG ALPPDQRVTW RASSGLFDGK ANGVDLVGGY YDAGDNVKFG LPMAFTVTMM
101: SWSILEYGKQ MAASGELKNA MDAVKWGTDY FIKAHPEPNV LYGEVGDGDT DHTCWQRPED MTTSRQAFRV DPQNPGSDLA GETAAAMAAA SMVFRTTYPG
201: YANLLLEHSK QLFEFADKYR GKYDTSITVA RNYYGSFSGY GDELLWAAAW LFEATEERFY LEYLARNGDA LGGTGWSINQ FGWDVKYPGV QVLAAKFLLQ
301: GRAGEHAKAL QRYRQNAEFF VCSCVGKGAV NVPRTPGGVM YHQRWNNLQF VTSASFLLTV YADYATVAGR GAVRCPGGAA QPFEILAFVK SQVNYILGDN
401: PRATSYMVGY GLNYPRQVHH RGASIVSVRT DPSFVSCQEG YSSWYNKQAV NPNILDGAIV GGPDEYDDFA DERNNYEQTE AATYNSAPLL GVLARLAGAC
501: GGLDEYQSLP QVAANRTSRP AHRRHPHLEV EQNVTRTWAI RRRTYHRYSV TVTNRSRKTV RGLHLGVSEL DGRLWGLDKA RYGYVPRRWL RALRPGRSVR
601: FGYVQPGPPA NVWVTGYKLV

Best Arabidopsis Sequence Match ( AT1G64390.1 )
(BLAST)

001: MEKFAPVAAL LLLLLCFPVA FSGHDYGQAL SKSLLFFEAQ RSGVLPRNQR VTWRSHSGLT DGKSSGVNLV GGYYDAGDNV KFGLPMAFTV TMMAWSVIEY
101: GNQLQANGEL GNSIDAIKWG TDYFIKAHPE PNVLYGEVGD GNTDHYCWQR PEEMTTDRKA YRIDPSNPGS DLAGETAAAM AAASIVFRRS NPVYSRLLLT
201: HAYQLFDFAD KYRGKYDSSI TVAQKYYRSV SGYNDELLWA AAWLYQASNN QFYLDYLGRN GDAMGGTGWS MTEFGWDVKY AGVQTLVAKF LMQGKAGRHA
301: PVFRKYQEKA DSFMCSLLGK SSRNIQKTPG GLIFRQRWNN MQFVTSASFL TTVYSDYLTS SRSNLRCAAG NVAPSQLLSF AKSQVDYILG DNPRATSYMV
401: GYGNNFPQRV HHRGSSIVSV KVDRTFVTCR GGYATWFSRK GSDPNLLTGA IVGGPDAYDN FADRRDNYEQ TEPATYNNAP LLGVLARLSS GHSGYSQFLP
501: VVPAPVVRRP MPIRRPKVTT PVRASGPVAI VQKITSSWVS KGRTYYRYST TVINKSSRPL KSLNLSIKNL YGPIWGLSRS GNSFGLPSWM HSLPSGKSLE
601: FVYIHSTTPA NVAVSSYTLA

Arabidopsis Description

AtGH9C2Endoglucanase 6 [Source:UniProtKB/Swiss-Prot;Acc:Q42059]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.