Factsheet for Solyc12g055970.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

plastid 1
nucleus 1
cytosol 3
plasma membrane 1
extracellular 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400012809	Potato	extracellular, vacuole	91.13	77.96
CDY08373	Canola	cytosol, extracellular, mitochondrion, nucleus	62.99	68.96
Solyc08g082250.2.1	Tomato	extracellular	75.76	56.0
VIT_02s0025g01380.t01	Wine grape	extracellular, vacuole	71.86	52.78
KRH41305	Soybean	nucleus	71.21	52.64
KRH60035	Soybean	nucleus	70.35	52.08
CDY34422	Canola	endoplasmic reticulum, extracellular, vacuole	67.53	50.32
Bra027699.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	67.1	49.92
CDY46529	Canola	extracellular, vacuole	67.1	49.92
GSMUA_Achr4P08520_001	Banana	endoplasmic reticulum, extracellular, vacuole	63.2	49.91
CDY47849	Canola	extracellular, vacuole	66.88	49.84
Bra027735.1-P	Field mustard	extracellular, vacuole	66.88	49.84
AT4G11050.1	Thale cress	vacuole	67.1	49.52
CDX90780	Canola	endoplasmic reticulum, extracellular	66.67	49.2
CDY05130	Canola	extracellular, vacuole	66.02	48.72
KXG31545	Sorghum	cytosol	50.65	43.01
TraesCS1A01G389300.1	Wheat	extracellular, vacuole	54.98	40.9
TraesCS1D01G397400.1	Wheat	extracellular, vacuole	54.55	40.65
TraesCS4B01G104500.1	Wheat	extracellular, vacuole	54.55	40.65
Os05t0212300-01	Rice	extracellular, vacuole	55.19	40.54
Zm00001d010446_P001	Maize	vacuole	54.11	40.13
EES19222	Sorghum	vacuole	54.33	40.03
Os01t0220100-01	Rice	extracellular, vacuole	55.19	39.84
HORVU1Hr1G085830.2	Barley	vacuole	53.68	39.74
HORVU3Hr1G029470.2	Barley	endoplasmic reticulum, extracellular, vacuole	52.81	39.17
EES00050	Sorghum	extracellular, mitochondrion, plastid, vacuole	54.98	38.84
Zm00001d008952_P001	Maize	extracellular	53.9	38.6
Os01t0219600-00	Rice	mitochondrion	52.81	38.12
TraesCS3A01G144600.1	Wheat	extracellular, vacuole	51.3	37.62
TraesCS3D01G153400.1	Wheat	extracellular, mitochondrion, plastid, vacuole	51.08	36.14
Solyc07g049300.2.1	Tomato	extracellular, vacuole	35.93	33.0
Solyc02g014220.2.1	Tomato	extracellular	43.72	31.96
Solyc07g064870.2.1	Tomato	mitochondrion	35.93	31.14
Solyc05g052530.1.1	Tomato	extracellular	32.68	31.07
Solyc09g075360.2.1	Tomato	plastid	32.9	29.8
Solyc06g066120.2.1	Tomato	extracellular, vacuole	29.22	27.78
Solyc09g010210.2.1	Tomato	plastid	29.22	27.61
Solyc08g083210.2.1	Tomato	extracellular, vacuole	29.44	27.36
Solyc08g081620.2.1	Tomato	extracellular	29.65	27.35
Solyc01g110340.2.1	Tomato	extracellular, vacuole	29.0	27.02
Solyc03g083820.1.1	Tomato	plastid	28.14	26.1
Solyc11g040340.1.1	Tomato	extracellular, vacuole	26.62	25.68

Protein Annotations

KEGG:00500+3.2.1.4	Gene3D:1.50.10.10	MapMan:35.1	InterPro:6-hairpin_glycosidase_sf	InterPro:6hp_glycosidase-like_sf	InterPro:CBM_49
GO:GO:0000272	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553	GO:GO:0005488	GO:GO:0005975
GO:GO:0008150	GO:GO:0008152	GO:GO:0008810	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787
GO:GO:0016798	GO:GO:0030245	GO:GO:0030246	InterPro:Glyco_hydro_9	InterPro:Glyco_hydro_9_Asp/Glu_AS	InterPro:Glyco_hydro_9_His_AS
InterPro:IPR012341	UniProt:K4DFS8	PFAM:PF00759	PFAM:PF09478	ScanProsite:PS00592	ScanProsite:PS00698
PANTHER:PTHR22298	PANTHER:PTHR22298:SF19	SMART:SM01063	SUPFAM:SSF48208	EnsemblPlantsGene:Solyc12g055970.1	EnsemblPlants:Solyc12g055970.1.1
UniParc:UPI0002769D28	SEG:seg	:	:	:	:

Description

Endoglucanase [Source:UniProtKB/TrEMBL;Acc:K4DFS8]

Coordinates

chr12:-:61952079..61954638

Molecular Weight (calculated)

50860.5 Da

IEP (calculated)

8.213

GRAVY (calculated)

-0.375

Length

462 amino acids

Sequence
(BLAST)

001: MTTSRAAYRI DPSRPGSDLA GETAAAMAAA SIVFRNYNPA YAEELLTHAY QLFEFADKYR GKYDSSITVA QKYYRSVSGY ADELLWAAAW LYKASNKPYY
101: LNYLGENGDA LGGTGWSMTE FGWDVKYAGV QTLAAKFLMQ GNAGNHAAVF EKYQEKAENF MCACLGKGNQ NIHKSPGGLI FRQRWNNMQF VTSASFLATV
201: YSDYLASAGK SLKCASGPVS SPELLDFAKS QVDYLLGDNP RATSYMVGYG NNYPRQVHHR GSSIVSVKID PTFVSCRGGY ATWFNRKAND PNLLTGAIVG
301: GPDAYDNFAD QRDNYEQTEP ATYNNAPLIG VLARLHGGQS EYSQLLPVAI PQPKPDPEQK TTPAPATDIA IEQKETTSWV HEGKTYYRYS AIVTNKSSKT
401: LKNLKLSVSQ LYGSLWGLSK YGDSYVFPAW INSLPTGKSL EFVYIHTANS PAVVSVSSYT LD

Best Arabidopsis Sequence Match ( AT1G64390.1 )
(BLAST)

001: MEKFAPVAAL LLLLLCFPVA FSGHDYGQAL SKSLLFFEAQ RSGVLPRNQR VTWRSHSGLT DGKSSGVNLV GGYYDAGDNV KFGLPMAFTV TMMAWSVIEY
101: GNQLQANGEL GNSIDAIKWG TDYFIKAHPE PNVLYGEVGD GNTDHYCWQR PEEMTTDRKA YRIDPSNPGS DLAGETAAAM AAASIVFRRS NPVYSRLLLT
201: HAYQLFDFAD KYRGKYDSSI TVAQKYYRSV SGYNDELLWA AAWLYQASNN QFYLDYLGRN GDAMGGTGWS MTEFGWDVKY AGVQTLVAKF LMQGKAGRHA
301: PVFRKYQEKA DSFMCSLLGK SSRNIQKTPG GLIFRQRWNN MQFVTSASFL TTVYSDYLTS SRSNLRCAAG NVAPSQLLSF AKSQVDYILG DNPRATSYMV
401: GYGNNFPQRV HHRGSSIVSV KVDRTFVTCR GGYATWFSRK GSDPNLLTGA IVGGPDAYDN FADRRDNYEQ TEPATYNNAP LLGVLARLSS GHSGYSQFLP
501: VVPAPVVRRP MPIRRPKVTT PVRASGPVAI VQKITSSWVS KGRTYYRYST TVINKSSRPL KSLNLSIKNL YGPIWGLSRS GNSFGLPSWM HSLPSGKSLE
601: FVYIHSTTPA NVAVSSYTLA

Arabidopsis Description

AtGH9C2Endoglucanase 6 [Source:UniProtKB/Swiss-Prot;Acc:Q42059]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.