Factsheet for Solyc09g010210.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 6
plasma membrane 6
golgi 5
nucleus 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	extracellular, plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

plastid: 20363867
plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400023082	Potato	extracellular, vacuole	96.73	96.73
AT1G70710.1	Thale cress	vacuole	78.94	78.46
CDX68334	Canola	endoplasmic reticulum	77.91	78.07
Bra003946.1-P	Field mustard	extracellular	77.51	77.66
CDY23486	Canola	extracellular	77.51	77.66
KRH60381	Soybean	nucleus	78.12	77.64
KRH41678	Soybean	nucleus	77.91	77.6
Bra016192.1-P	Field mustard	extracellular, vacuole	77.91	76.35
CDX96271	Canola	extracellular, vacuole	77.91	76.35
CDY11552	Canola	endoplasmic reticulum, extracellular	77.71	76.15
AT1G23210.1	Thale cress	endoplasmic reticulum, extracellular, vacuole	75.66	75.66
Bra024571.1-P	Field mustard	extracellular	76.07	75.3
CDY21424	Canola	extracellular	76.07	75.3
CDY04737	Canola	extracellular, vacuole	75.66	75.2
GSMUA_Achr5P05960_001	Banana	extracellular, vacuole	71.17	69.74
Os06t0256900-01	Rice	endoplasmic reticulum, extracellular, vacuole	70.76	69.62
HORVU6Hr1G073570.3	Barley	extracellular	70.55	69.42
TraesCS7D01G207600.1	Wheat	extracellular	70.76	69.34
HORVU7Hr1G041610.1	Barley	vacuole	70.96	69.12
TraesCS6B01G325400.1	Wheat	extracellular	69.94	68.95
TraesCS6A01G295300.1	Wheat	extracellular	69.94	68.95
TraesCS6D01G275900.1	Wheat	extracellular	69.94	68.67
TraesCS7A01G204500.1	Wheat	extracellular	70.55	68.59
Os02t0733300-01	Rice	extracellular	70.55	67.91
EES07307	Sorghum	vacuole	69.73	67.66
Zm00001d037338_P001	Maize	vacuole	69.12	67.6
Zm00001d017949_P001	Maize	extracellular	66.67	67.22
TraesCS7B01G111700.1	Wheat	extracellular	70.96	65.72
EER89549	Sorghum	mitochondrion	70.14	61.03
Solyc01g110340.2.1	Tomato	extracellular, vacuole	58.49	57.66
Solyc09g075360.2.1	Tomato	plastid	58.08	55.69
Solyc03g083820.1.1	Tomato	plastid	56.44	55.42
Solyc11g040340.1.1	Tomato	extracellular, vacuole	52.56	53.65
Solyc08g083210.2.1	Tomato	extracellular, vacuole	53.78	52.92
Solyc08g081620.2.1	Tomato	extracellular	48.26	47.11
Solyc05g052530.1.1	Tomato	extracellular	46.42	46.71
Solyc06g066120.2.1	Tomato	extracellular, vacuole	45.81	46.09
Solyc07g049300.2.1	Tomato	extracellular, vacuole	46.01	44.73
Solyc07g064870.2.1	Tomato	mitochondrion	46.01	42.21
Solyc08g082250.2.1	Tomato	extracellular	48.67	38.08
Solyc02g014220.2.1	Tomato	extracellular	46.42	35.92
Solyc12g055970.1.1	Tomato	cytosol, nucleus	27.61	29.22

Protein Annotations

KEGG:00500+3.2.1.4	Gene3D:1.50.10.10	MapMan:35.1	InterPro:6-hairpin_glycosidase_sf	InterPro:6hp_glycosidase-like_sf	GO:GO:0000272
GO:GO:0003674	GO:GO:0003824	GO:GO:0004553	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152
GO:GO:0008810	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0016798	GO:GO:0030245
InterPro:Glyco_hydro_9	InterPro:Glyco_hydro_9_Asp/Glu_AS	InterPro:IPR012341	PFAM:PF00759	ScanProsite:PS00698	PANTHER:PTHR22298
PANTHER:PTHR22298:SF28	UniProt:Q42872	SUPFAM:SSF48208	SignalP:SignalP-noTM	EnsemblPlantsGene:Solyc09g010210.2	EnsemblPlants:Solyc09g010210.2.1
TMHMM:TMhelix	EMBL:U13055	UniParc:UPI000009DCDA	SEG:seg	:	:

Description

Endoglucanase [Source:UniProtKB/TrEMBL;Acc:Q42872]

Coordinates

chr9:+:3596732..3601979

Molecular Weight (calculated)

54121.2 Da

IEP (calculated)

8.362

GRAVY (calculated)

-0.171

Length

489 amino acids

Sequence
(BLAST)

001: MAPKYTSIIF LFLLFNSFSC SFGGGHDYHD ALRKSILFYE GQRSGKLPPD QRIKWRRDSA LHDGASAGVD LTGGYYDAGD NVKFVFPMAF TTTLLSWSII
101: DFKRNIGNEL GNAVKAVKWG TDFLLKATAR DGVIYVQVGD AFSDHSCWER PEDMDTLRTV YKIDANNPGS DVAGEIAAAL AAASIVFRSL DSSYSNLLLD
201: RAVKVFDFAN RHRGAYSSSL HSAVCPFYCD FNGYQDELLW GAAWLHKATR RRQYREYIVK NEVILRAGDT INEFGWDNKH AGINVLISKE VLMGKAPDLK
301: SFQVNADAFI CSILPGISHP QVQYSPGGLI VKPGVCNMQH VTSLSFLLLT YSNYLSHANH VVPCGSMTAT PALLKHIAKR QVDYILGDNP QRMSYMVGYG
401: PHYPQRIHHR GSSVPSVATH SARIGCKEGS RYFFSPNPNP NRLIGAVVGG PNLTDSFPDA RPYFQESEPT TYVNAPLVGL LAYFAAHSN

Best Arabidopsis Sequence Match ( AT1G70710.1 )
(BLAST)

001: MARKSLIFPV ILLAVLLFSP PIYSAGHDYR DALRKSILFF EGQRSGKLPP DQRLKWRRDS ALRDGSSAGV DLSGGYYDAG DNIKFGFPMA FTTTMLSWSI
101: IDFGKTMGPE LRNAVKAVKW GTDYLLKATA IPGVVFVQVG DAYSDHNCWE RPEDMDTLRT VYKIDRAHPG SDVAGETAAA LAAASIVFRK RDPAYSRLLL
201: DRATRVFAFA NRYRGAYSNS LYHAVCPFYC DFNGYQDELL WGAAWLHKAS RKRAYREFIV KNEVILKAGD TINEFGWDNK HAGINVLISK EVLMGKAEYF
301: ESFKQNADGF ICSILPGISH PQVQYSRGGL LVKTGGSNMQ HVTSLSFLLL AYSNYLSHAK KVVPCGELTA SPSLLRQIAK RQVDYILGDN PMGLSYMVGY
401: GQKFPRRIHH RGSSVPSVSA HPSHIGCKEG SRYFLSPNPN PNLLVGAVVG GPNVTDAFPD SRPYFQQSEP TTYINAPLVG LLGYFSAHST WR

Arabidopsis Description

CEL1Endoglucanase 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAC1]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.