Factsheet for Solyc08g081620.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 2
extracellular 7
endoplasmic reticulum 4
vacuole 5
plasma membrane 5
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	extracellular, plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

extracellular: 22364583
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc07g065490.2.1
Solyc10g006000.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G23560.1	Solyc07g065490.2.1	AT4G26630.1	25387881
AT4G23560.1	Solyc10g006000.2.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400031762	Potato	extracellular	95.41	95.22
VIT_02s0025g00430.t01	Wine grape	extracellular, vacuole	70.06	69.78
Bra013709.1-P	Field mustard	extracellular	64.47	67.29
CDY44116	Canola	extracellular	64.47	67.29
CDY10895	Canola	extracellular	64.27	67.08
AT4G09740.1	Thale cress	extracellular	63.47	66.53
CDX94202	Canola	vacuole	63.67	66.46
Bra019296.1-P	Field mustard	extracellular, vacuole	63.47	66.25
CDY10945	Canola	extracellular, vacuole	63.47	66.25
AT4G23560.1	Thale cress	extracellular	63.27	66.18
KRH27886	Soybean	extracellular	66.07	64.77
Zm00001d032271_P001	Maize	extracellular	57.48	56.36
TraesCS1D01G090100.1	Wheat	extracellular	56.29	56.06
EES13778	Sorghum	extracellular	57.68	55.9
Os08t0387400-01	Rice	extracellular	57.48	55.81
TraesCS1B01G107700.1	Wheat	extracellular	56.09	55.53
TraesCS1A01G088700.1	Wheat	extracellular	56.09	55.53
HORVU1Hr1G019520.1	Barley	golgi, mitochondrion, vacuole	56.29	52.91
Solyc08g083210.2.1	Tomato	extracellular, vacuole	50.3	50.7
Solyc11g040340.1.1	Tomato	extracellular, vacuole	47.9	50.1
Solyc09g010210.2.1	Tomato	plastid	47.11	48.26
Solyc09g075360.2.1	Tomato	plastid	48.7	47.84
Solyc05g052530.1.1	Tomato	extracellular	45.91	47.33
Solyc03g083820.1.1	Tomato	plastid	45.71	45.98
Solyc01g110340.2.1	Tomato	extracellular, vacuole	45.51	45.97
Solyc06g066120.2.1	Tomato	extracellular, vacuole	43.91	45.27
Solyc07g049300.2.1	Tomato	extracellular, vacuole	44.11	43.94
Solyc07g064870.2.1	Tomato	mitochondrion	41.72	39.21
Solyc08g082250.2.1	Tomato	extracellular	44.91	36.0
Solyc02g014220.2.1	Tomato	extracellular	45.31	35.92
Solyc12g055970.1.1	Tomato	cytosol, nucleus	27.35	29.65

Protein Annotations

KEGG:00500+3.2.1.4	Gene3D:1.50.10.10	MapMan:35.1	InterPro:6-hairpin_glycosidase_sf	InterPro:6hp_glycosidase-like_sf	GO:GO:0000272
GO:GO:0003674	GO:GO:0003824	GO:GO:0004553	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152
GO:GO:0008810	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0016798	GO:GO:0030245
InterPro:Glyco_hydro_9	InterPro:Glyco_hydro_9_Asp/Glu_AS	InterPro:Glyco_hydro_9_His_AS	InterPro:IPR012341	PFAM:PF00759	ScanProsite:PS00592
ScanProsite:PS00698	PANTHER:PTHR22298	PANTHER:PTHR22298:SF22	UniProt:Q42871	SUPFAM:SSF48208	SignalP:SignalP-noTM
EnsemblPlantsGene:Solyc08g081620.2	EnsemblPlants:Solyc08g081620.2.1	TMHMM:TMhelix	EMBL:U13054	UniParc:UPI00000A8541	SEG:seg

Description

Endoglucanase [Source:UniProtKB/TrEMBL;Acc:Q42871]

Coordinates

chr8:-:64611928..64615480

Molecular Weight (calculated)

55280.0 Da

IEP (calculated)

7.762

GRAVY (calculated)

-0.244

Length

501 amino acids

Sequence
(BLAST)

001: MACSKNIWVI VIFFLCILAG PIIAQDYNDS LGKAILFFEG QRSGKLPVSQ RVKWRGDSAL IDGIIEHVNL IGGYYDAGDN VKFGWPMAYS LTLLSWAAIE
101: YQTQISSTNQ LVHLQNAIRW GTNFLIRAHT SSTTLYTQVG DGNADHQCWE RPEDMDTPRT LYKITSNSPG SEVAADVAAA FAAASIVFKN IDSNYSTKLL
201: KRSRSLFAFA DKYRGSYQAS CPFYCSYSGY KDELLWAAAW LYKAGGGNNY LNYASINQGW SQVASEFSWD DKFAGAQTLL AKEYLNGKSN LEKFKKDADS
301: FICGLMPESS SIQIKTTPGG LLYYRDSSNL QYVNGATMVL FMYTKVLEAA GIGGVTCGSV NFSTSKIKAF AKLQVDYILG NNPLKMSYMV GFGNKYPTKL
401: HHRASSLPSI YNHPTRVGCN DGYSSWYNSN NPNPNTHVGA IVGGPNSGDQ FIDSRSDYSH SEPTTYMNAA FIGSVAALID QTKEGEHYGE INSQFNKTGF
501: M

Best Arabidopsis Sequence Match ( AT4G09740.1 )
(BLAST)

001: MGKLLVVMLI GMFLAFESLE ALDYGDALNK SILFFEGQRS GKLPTNQRVK WRADSGLSDG ASANVNLIGG YYDAGDNVKF VWPMSFTTTL LSWAALEYQN
101: EITFVNQLGY LRSTIKWGTN FILRAHTSTN MLYTQVGDGN SDHSCWERPE DMDTPRTLYS ISSSSPGSEA AGEAAAALAA ASLVFKLVDS TYSSKLLNNA
201: KSLFEFADKY RGSYQASCPF YCSHSGYQDE LLWAAAWLYK ATGEKSYLNY VISNKDWSKA INEFSWDNKF AGVQALLASE FYNGANDLEK FKTDVESFVC
301: ALMPGSSSQQ IKPTPGGILF IRDSSNLQYV TTATTILFYY SKTLTKAGVG SIQCGSTQFT VSQIRNFAKS QVDYILGNNP LKMSYMVGFG TKYPTQPHHR
401: GSSLPSIQSK PEKIDCNGGF SYYNFDTPNP NVHTGAIVGG PNSSDQYSDK RTDYSHAEPT TYINAAFIGS VAALISSS

Arabidopsis Description

AtGH9B14Endoglucanase 18 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZ90]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.