Factsheet for Zm00001d032271_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 4
vacuole 5
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d013757_P010
Zm00001d033159_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G23560.1	Zm00001d013757_P010	AT4G26630.1	25387881
AT4G23560.1	Zm00001d033159_P001	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES13778	Sorghum	extracellular	90.22	89.17
TraesCS1D01G090100.1	Wheat	extracellular	74.56	75.75
TraesCS1B01G107700.1	Wheat	extracellular	74.95	75.69
TraesCS1A01G088700.1	Wheat	extracellular	74.76	75.49
Os08t0387400-01	Rice	extracellular	75.54	74.81
HORVU1Hr1G019520.1	Barley	golgi, mitochondrion, vacuole	73.78	70.73
VIT_02s0025g00430.t01	Wine grape	extracellular, vacuole	59.1	60.04
CDX94202	Canola	vacuole	55.77	59.38
Bra019296.1-P	Field mustard	extracellular, vacuole	55.58	59.17
CDY10945	Canola	extracellular, vacuole	55.58	59.17
Bra013709.1-P	Field mustard	extracellular	55.19	58.75
CDY44116	Canola	extracellular	55.19	58.75
AT4G23560.1	Thale cress	extracellular	54.99	58.66
AT4G09740.1	Thale cress	extracellular	54.6	58.37
CDY10895	Canola	extracellular	54.6	58.12
KRH27886	Soybean	extracellular	58.12	58.12
Solyc08g081620.2.1	Tomato	extracellular	56.36	57.48
PGSC0003DMT400031762	Potato	extracellular	56.36	57.37
Zm00001d009097_P001	Maize	extracellular	47.95	47.12
Zm00001d015067_P001	Maize	plasma membrane, vacuole	46.18	45.12
Zm00001d037338_P001	Maize	vacuole	44.03	45.0
Zm00001d035442_P001	Maize	extracellular, vacuole	36.2	44.36
Zm00001d025475_P001	Maize	extracellular, vacuole	44.03	44.2
Zm00001d017949_P001	Maize	extracellular	41.29	43.51
Zm00001d035082_P001	Maize	extracellular	41.88	42.71
Zm00001d015292_P001	Maize	endoplasmic reticulum, extracellular, vacuole	43.84	42.59
Zm00001d051814_P002	Maize	vacuole	44.23	42.48
Zm00001d044744_P001	Maize	extracellular, vacuole	45.01	42.44
Zm00001d017978_P001	Maize	plasma membrane	44.81	42.17
Zm00001d020371_P001	Maize	mitochondrion	44.23	41.93
Zm00001d021280_P004	Maize	vacuole	44.62	41.45
Zm00001d008952_P001	Maize	extracellular	46.77	37.05
Zm00001d010446_P001	Maize	vacuole	44.42	36.44
Zm00001d026605_P001	Maize	vacuole	44.42	36.32

Protein Annotations

KEGG:00500+3.2.1.4	Gene3D:1.50.10.10	EntrezGene:100274182	MapMan:35.1	InterPro:6-hairpin_glycosidase_sf	InterPro:6hp_glycosidase-like_sf
UniProt:B4FZG0	EMBL:BT042498	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553	GO:GO:0005975
GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:Glyco_hydro_9	InterPro:IPR012341	ProteinID:ONM04745.1
PFAM:PF00759	PANTHER:PTHR22298	PANTHER:PTHR22298:SF22	SUPFAM:SSF48208	SignalP:SignalP-noTM	TMHMM:TMhelix
UniParc:UPI00017B7D2E	EnsemblPlantsGene:Zm00001d032271	EnsemblPlants:Zm00001d032271_P001	EnsemblPlants:Zm00001d032271_T001	SEG:seg	:

Description

Endoglucanase 20

Coordinates

chr1:+:219873959..219876805

Molecular Weight (calculated)

55438.7 Da

IEP (calculated)

6.316

GRAVY (calculated)

-0.271

Length

511 amino acids

Sequence
(BLAST)

001: MAVKVWVFAV ALMMCAGVGL GADDDGGSRL ISRCRLSSPN YRGALAKAIL FFEGQRSGRL PANQRVRWRG DSALTDGQPE NVNLTGGYYD AGDNVKFGFP
101: MAFSVTLLSW SAVEYRDEVA AAGQLRHLRS AIQWGADFLL RAHTTPTTLY TQVGDGNADH QCWERPEDMD TPRTLYKITR SSPGSEAAGE AAAALAAAYL
201: VFRDDRDKTL ATQLLAASRS LFDFANDYRG SYQLSCPFYC SYSGYQDELQ WASAWLYRAT KDSKYLDFLQ NNQGGSATEF SWDNKYPGAQ LLATQEYLAG
301: RTELEGYKRG LDSFVCAVMP NSGNTQIRTT PGGLLFTRDS VNLQYTTTAT LLLSIYAKAL LASAAGAVQC SAATFSPDQI SSFATSQVDY ILGDNPRSAS
401: YMVGFSSKFP RRIHHRGSSI PSIKVLPRKV TCSEGFSSWF PTANPNPNVH VGAIVGGPDG NDQFGDNRED STHSEPATYI NAAFVGACAA ALGRSQQVPV
501: DETASAHSDV M

Best Arabidopsis Sequence Match ( AT4G23560.1 )
(BLAST)

001: MGKLLVLMLV GMFLAFESLE ALEYGDALNK SILFFEGQRS GKLPTNQRVK WRADSALSDG SLANVNLIGG YYDAGDNVKF VWPMSFTTTL LSWAAIEYQN
101: EISSVNQLGY LRSTIKWGTD FILRAHTSPN MLYTQVGDGN SDHSCWERPE DMDTSRTLYS ISSSSPGSEA AGEAAAALAA ASLVFKSVDS TYSSTLLNHA
201: KTLFEFADKY RGSYQASCPF YCSYSGYQDE LLWAAAWLYK ATGDKIYINY VISNKDWSQA VNEFSWDNKF VGAQALLVSE FYNGANDLAK FKSDVESFVC
301: AMMPGSSSQQ IKPTPGGLLF IRDSSNLQYV TTATTVLFHY SKTLTKAGVG SIQCGSTKFT VSQIRNFAKS QVDYILGNNP MKMSYMVGFG TKYPTQPHHR
401: GSSLPSIQSK PEKIDCNGGY SYYNSDTPNP NVHIGAIVGG PNSSDQYSDK KSDYSHAEPT TYINAAFIGP VAALISSSG

Arabidopsis Description

AtGH9B15Endoglucanase 20 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUS0]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.