Subcellular Localization
min:
: max
Winner_takes_all: vacuole
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 5
- vacuole 7
- plasma membrane 5
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G23560.1 | CDX89318 | AT4G26630.1 | 25387881 |
| AT4G23560.1 | CDX94304 | AT4G26630.1 | 25387881 |
| AT4G23560.1 | CDX97358 | AT4G26630.1 | 25387881 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY10945 | Canola | extracellular, vacuole | 98.96 | 98.96 |
| CDY44116 | Canola | extracellular | 86.46 | 86.46 |
| CDY10895 | Canola | extracellular | 85.42 | 85.42 |
| AT4G23560.1 | Thale cress | extracellular | 82.5 | 82.67 |
| AT4G09740.1 | Thale cress | extracellular | 80.62 | 80.96 |
| VIT_02s0025g00430.t01 | Wine grape | extracellular, vacuole | 69.17 | 66.0 |
| KRH27886 | Soybean | extracellular | 69.79 | 65.56 |
| Solyc08g081620.2.1 | Tomato | extracellular | 66.46 | 63.67 |
| PGSC0003DMT400031762 | Potato | extracellular | 66.46 | 63.55 |
| TraesCS1D01G090100.1 | Wheat | extracellular | 59.17 | 56.46 |
| EES13778 | Sorghum | extracellular | 60.42 | 56.09 |
| TraesCS1B01G107700.1 | Wheat | extracellular | 58.96 | 55.93 |
| Zm00001d032271_P001 | Maize | extracellular | 59.38 | 55.77 |
| Os08t0387400-01 | Rice | extracellular | 59.79 | 55.62 |
| TraesCS1A01G088700.1 | Wheat | extracellular | 58.54 | 55.53 |
| HORVU1Hr1G019520.1 | Barley | golgi, mitochondrion, vacuole | 58.96 | 53.1 |
| CDY60076 | Canola | extracellular | 25.62 | 50.83 |
| CDY42599 | Canola | cytosol | 49.17 | 49.68 |
| CDY32480 | Canola | extracellular, vacuole | 52.71 | 49.41 |
| CDX83426 | Canola | extracellular, plastid, vacuole | 48.96 | 49.06 |
| CDX96319 | Canola | extracellular, plastid, vacuole | 49.38 | 48.97 |
| CDY37459 | Canola | endoplasmic reticulum, extracellular | 51.88 | 48.82 |
| CDY66787 | Canola | extracellular, plastid, vacuole | 48.96 | 48.55 |
| CDY12503 | Canola | extracellular, vacuole | 48.54 | 48.24 |
| CDY25758 | Canola | extracellular, vacuole | 48.33 | 48.03 |
| CDY41955 | Canola | extracellular, vacuole | 49.38 | 47.88 |
| CDY37936 | Canola | extracellular | 45.42 | 47.81 |
| CDX74667 | Canola | extracellular, vacuole | 43.12 | 47.81 |
| CDX74666 | Canola | vacuole | 48.54 | 47.65 |
| CDY21221 | Canola | golgi, vacuole | 48.12 | 47.53 |
| CDY30943 | Canola | golgi, vacuole | 48.12 | 47.53 |
| CDX97262 | Canola | vacuole | 50.62 | 47.28 |
| CDX74668 | Canola | extracellular | 48.33 | 47.06 |
| CDY47675 | Canola | vacuole | 47.92 | 47.03 |
| CDX74664 | Canola | extracellular, vacuole | 47.92 | 47.03 |
| CDX87948 | Canola | extracellular, vacuole | 47.5 | 46.91 |
| CDY12319 | Canola | cytosol, extracellular, vacuole | 47.5 | 46.91 |
| CDY03687 | Canola | extracellular | 47.29 | 46.9 |
| CDX95605 | Canola | extracellular, vacuole | 48.75 | 46.89 |
| CDY03686 | Canola | extracellular | 46.88 | 46.58 |
| CDY37939 | Canola | extracellular, vacuole | 46.88 | 46.58 |
| CDY04737 | Canola | extracellular, vacuole | 47.71 | 46.54 |
| CDY22043 | Canola | extracellular, vacuole | 50.21 | 46.53 |
| CDY52780 | Canola | extracellular, vacuole | 50.0 | 46.33 |
| CDX68334 | Canola | endoplasmic reticulum | 47.08 | 46.31 |
| CDY47674 | Canola | extracellular, vacuole | 47.5 | 46.25 |
| CDY21424 | Canola | extracellular | 47.5 | 46.15 |
| CDY23486 | Canola | extracellular | 46.88 | 46.11 |
| CDX96271 | Canola | extracellular, vacuole | 47.29 | 45.49 |
| CDY11552 | Canola | endoplasmic reticulum, extracellular | 47.29 | 45.49 |
| CDY42597 | Canola | extracellular | 43.12 | 44.33 |
| CDY22399 | Canola | extracellular | 45.42 | 44.31 |
| CDX72723 | Canola | extracellular | 45.21 | 44.11 |
| CDY01915 | Canola | cytosol | 33.12 | 43.8 |
| CDY41954 | Canola | vacuole | 42.5 | 43.68 |
| CDY22400 | Canola | extracellular, vacuole | 40.83 | 42.15 |
| CDY17123 | Canola | vacuole | 45.42 | 41.76 |
| CDY19428 | Canola | vacuole | 45.42 | 41.76 |
| CDY23776 | Canola | vacuole | 45.21 | 41.25 |
| CDY19174 | Canola | vacuole | 45.0 | 40.99 |
| CDY34422 | Canola | endoplasmic reticulum, extracellular, vacuole | 49.17 | 38.06 |
| CDY47849 | Canola | extracellular, vacuole | 49.17 | 38.06 |
| CDY46529 | Canola | extracellular, vacuole | 48.96 | 37.84 |
| CDY65179 | Canola | extracellular | 48.12 | 36.9 |
| CDY60075 | Canola | vacuole | 47.92 | 36.74 |
| CDY05130 | Canola | extracellular, vacuole | 47.71 | 36.58 |
| CDX90780 | Canola | endoplasmic reticulum, extracellular | 47.71 | 36.58 |
| CDX93707 | Canola | vacuole | 47.29 | 36.38 |
| CDY59895 | Canola | cytosol, vacuole | 35.42 | 33.53 |
| CDY08373 | Canola | cytosol, extracellular, mitochondrion, nucleus | 26.25 | 29.86 |
Protein Annotations
| KEGG:00500+3.2.1.4 | Gene3D:1.50.10.10 | MapMan:35.1 | InterPro:6-hairpin_glycosidase_sf | InterPro:6hp_glycosidase-like_sf | GO:A0A078DZ51 |
| EnsemblPlants:CDX94202 | ProteinID:CDX94202 | ProteinID:CDX94202.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004553 |
| GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008810 | GO:GO:0016787 | EnsemblPlantsGene:GSBRNA2T00157138001 |
| InterPro:Glyco_hydro_9 | InterPro:Glyco_hydro_9_Asp/Glu_AS | InterPro:Glyco_hydro_9_His_AS | InterPro:IPR012341 | PFAM:PF00759 | ScanProsite:PS00592 |
| ScanProsite:PS00698 | PANTHER:PTHR22298 | PANTHER:PTHR22298:SF22 | MetaCyc:PWY-6788 | SUPFAM:SSF48208 | SignalP:SignalP-noTM |
| TMHMM:TMhelix | UniParc:UPI0004EF31D0 | SEG:seg | : | : | : |
Description
BnaC07g38360D
Coordinates
chrLK031879:-:1242108..1244883
Molecular Weight (calculated)
52651.7 Da
IEP (calculated)
8.252
GRAVY (calculated)
-0.329
Length
480 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKLLLVMLV VLIMAFQSLG TLDYGHALNK SILFFEGQRS GKLPVKQRVN WRADSALSDG SPDNVNLIGG YYDAGDNVKF VWPMAFTTTL LSWAAIEYQK
101: EISSVNQLGY LRSAIKWGTD FIIRAHPSPT TLYTQVGDGN ADHACWQRPE DMDTVRTLYK ISSSSPGSEV ASEAAAALAS ASLVFKSFDS KYSSTLLSHA
201: KSLFEFADQH RGSYQASCPF YCSHSGYNDE LLWAAAWLYK ATGENKYLSY VASNQGWSQA VNEFSWDNKF AGAQALLASE FYNGKNELGK FKNDVESFVC
301: ALMPGSSSQQ IKPTPGGLLF TRDGSNLQYA TTATTVLFHY SKTLTRARVG SIQCGSTKFT ASQIHDFAKS QVDYILGNNP KKMSYMVGFG NKCPTQPHHR
401: SSSLPSIKSK PDKIDCKGGF SYFNSDQPNP NEHTGAIVGG PDSSDHFSDK RSDYAHAEPT TYINAAFIGP VAALIRRNSN
101: EISSVNQLGY LRSAIKWGTD FIIRAHPSPT TLYTQVGDGN ADHACWQRPE DMDTVRTLYK ISSSSPGSEV ASEAAAALAS ASLVFKSFDS KYSSTLLSHA
201: KSLFEFADQH RGSYQASCPF YCSHSGYNDE LLWAAAWLYK ATGENKYLSY VASNQGWSQA VNEFSWDNKF AGAQALLASE FYNGKNELGK FKNDVESFVC
301: ALMPGSSSQQ IKPTPGGLLF TRDGSNLQYA TTATTVLFHY SKTLTRARVG SIQCGSTKFT ASQIHDFAKS QVDYILGNNP KKMSYMVGFG NKCPTQPHHR
401: SSSLPSIKSK PDKIDCKGGF SYFNSDQPNP NEHTGAIVGG PDSSDHFSDK RSDYAHAEPT TYINAAFIGP VAALIRRNSN
001: MGKLLVLMLV GMFLAFESLE ALEYGDALNK SILFFEGQRS GKLPTNQRVK WRADSALSDG SLANVNLIGG YYDAGDNVKF VWPMSFTTTL LSWAAIEYQN
101: EISSVNQLGY LRSTIKWGTD FILRAHTSPN MLYTQVGDGN SDHSCWERPE DMDTSRTLYS ISSSSPGSEA AGEAAAALAA ASLVFKSVDS TYSSTLLNHA
201: KTLFEFADKY RGSYQASCPF YCSYSGYQDE LLWAAAWLYK ATGDKIYINY VISNKDWSQA VNEFSWDNKF VGAQALLVSE FYNGANDLAK FKSDVESFVC
301: AMMPGSSSQQ IKPTPGGLLF IRDSSNLQYV TTATTVLFHY SKTLTKAGVG SIQCGSTKFT VSQIRNFAKS QVDYILGNNP MKMSYMVGFG TKYPTQPHHR
401: GSSLPSIQSK PEKIDCNGGY SYYNSDTPNP NVHIGAIVGG PNSSDQYSDK KSDYSHAEPT TYINAAFIGP VAALISSSG
101: EISSVNQLGY LRSTIKWGTD FILRAHTSPN MLYTQVGDGN SDHSCWERPE DMDTSRTLYS ISSSSPGSEA AGEAAAALAA ASLVFKSVDS TYSSTLLNHA
201: KTLFEFADKY RGSYQASCPF YCSYSGYQDE LLWAAAWLYK ATGDKIYINY VISNKDWSQA VNEFSWDNKF VGAQALLVSE FYNGANDLAK FKSDVESFVC
301: AMMPGSSSQQ IKPTPGGLLF IRDSSNLQYV TTATTVLFHY SKTLTKAGVG SIQCGSTKFT VSQIRNFAKS QVDYILGNNP MKMSYMVGFG TKYPTQPHHR
401: GSSLPSIQSK PEKIDCNGGY SYYNSDTPNP NVHIGAIVGG PNSSDQYSDK KSDYSHAEPT TYINAAFIGP VAALISSSG
Arabidopsis Description
AtGH9B15Endoglucanase 20 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUS0]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.